View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_4 (Length: 527)
Name: NF4660_low_4
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Complemental strand, 7542611 - 7542119
Alignment:
| Q |
18 |
ccaacaaggtaaagcaaaaatcgaagttcatttaaacgtgctgaaaccgtaggggaagacaatttatcctcagtttgagccttcatccatgttaacatat |
117 |
Q |
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| T |
7542611 |
ccaacaaggtaaagcaaaaatcgaagttcatttaaacgtgctgaaaccgtaggggaagacaatttatcctcagtttgagccttcatccatgttaacatat |
7542512 |
T |
|
| Q |
118 |
tttgccatcttaatgtcacattacttcccatgtttgaaaacatttcttcaggtataggtatttcaagaacagtttccaatccatcttctttgtctatgtt |
217 |
Q |
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| T |
7542511 |
tttgccatcttaatgtcacattacttcccatgtttgaaaacatttcttcaggtataggtatttcaagaacagtttccaatccatcttctttgtctatgtt |
7542412 |
T |
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| Q |
218 |
tggacataacctccttaatgatgattttgcagcaggttgtttcatttgattagtgtgagattgagacaagtgaagaatttgatgagagaaaattaaggaa |
317 |
Q |
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| T |
7542411 |
tggacataacctccttaatgatgattttgcagcaggttgtttcatttgattagtgtgagattgagacaagtgaagaatttgatgagagaaaattaaggaa |
7542312 |
T |
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| Q |
318 |
gagggttatagtcaaaaggctaaatcatctttaattaatgtatgaacattgagaaggtgatgttaattagaaggttgtccttgtttataggtgttgtatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7542311 |
gagggttatagtcaaaaggctaaatcatctttaattaatgtatgaacattgagaaggtgatgttaattagaaggttgtccttgtttataggtgttgtatg |
7542212 |
T |
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| Q |
418 |
ggcacaaattatggtttgttatgtttgattgttttttgcttaagtttctatttaaagatttaatccatgatttttgcttatagctagtagtat |
510 |
Q |
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| T |
7542211 |
ggcacaaattatggtttgttgtgtttgattgttttttgcttaagtttctatttaaagatttaatccatgatttttgcttatagctcgtagtat |
7542119 |
T |
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