View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4660_low_40 (Length: 228)

Name: NF4660_low_40
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4660_low_40
NF4660_low_40
[»] chr3 (8 HSPs)
chr3 (7-228)||(36002361-36002582)
chr3 (156-214)||(36023603-36023661)
chr3 (156-219)||(23351901-23351964)
chr3 (161-219)||(23472409-23472467)
chr3 (155-219)||(23386234-23386298)
chr3 (161-219)||(23439874-23439932)
chr3 (155-219)||(23404608-23404672)
chr3 (155-219)||(23463239-23463303)
[»] chr2 (2 HSPs)
chr2 (17-101)||(16337574-16337658)
chr2 (17-101)||(16121510-16121594)
[»] chr4 (2 HSPs)
chr4 (155-216)||(12896971-12897032)
chr4 (17-101)||(12897074-12897158)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 36002361 - 36002582
Alignment:
Q  7 agaagcttgctggcaaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcacaatgga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36002361 agaagcttgctggcaaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcacaatgga 36002460  T
Q  107 tccttcatttcttccatttgtcagaaatatattatgtaaactattaaggatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36002461 tccttcatttcttccatttgtcagaaatatattatgtaaactattaaggatatgaagatatcttaagttggtcatgcttttaaatgaagcagagctcaag 36002560  T
Q  207 tatagatccccaaagtcacaaa 228  Q
    ||||||||||||||||||||||    
T  36002561 tatagatccccaaagtcacaaa 36002582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 36023603 - 36023661
Alignment:
Q  156 atatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatc 214  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  36023603 atatgaagacatcttaagttggtcatgcttttaaaggaatcagaggtcaagtatagatc 36023661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 23351901 - 23351964
Alignment:
Q  156 atatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaa 219  Q
    |||| ||||||||||||||| ||||| |||||||||||| ||||  ||||||||||||||||||    
T  23351901 atatcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaa 23351964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 23472409 - 23472467
Alignment:
Q  161 aagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaa 219  Q
    ||||||||||||||| ||||| ||| |||||||| ||||  ||||||||||||||||||    
T  23472409 aagatatcttaagtttgtcatccttctaaaggaatcagacttcaagtatagatccccaa 23472467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 23386234 - 23386298
Alignment:
Q  155 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaa 219  Q
    ||||| |||||||||||| || ||||| ||| |||||||| ||||  ||||||||||||||||||    
T  23386234 gatattaagatatcttaaatttgtcatccttctaaaggaatcagacttcaagtatagatccccaa 23386298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 23439874 - 23439932
Alignment:
Q  161 aagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaa 219  Q
    ||||||||||||||| | ||| ||| |||||||| ||||  ||||||||||||||||||    
T  23439874 aagatatcttaagtttgccatccttctaaaggaatcagacttcaagtatagatccccaa 23439932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 23404608 - 23404672
Alignment:
Q  155 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaa 219  Q
    ||||| ||||||||||||||| ||||| ||| |||||||| ||||  ||||||| | ||||||||    
T  23404608 gatattaagatatcttaagtttgtcatccttctaaaggaatcagacttcaagtaaatatccccaa 23404672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 23463239 - 23463303
Alignment:
Q  155 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaa 219  Q
    |||||||||||||||||| || ||||| ||| |||||||| ||||  ||||||| | ||||||||    
T  23463239 gatatgaagatatcttaaatttgtcatccttctaaaggaatcagacttcaagtaaatatccccaa 23463303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 16337658 - 16337574
Alignment:
Q  17 tggcaaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcaca 101  Q
    ||||||||| | |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  16337658 tggcaaagattcaagtggaaatgattcccaatgaaggtacctcaatttatcagacaaccactcaagaccttcttggagatgcaca 16337574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 16121510 - 16121594
Alignment:
Q  17 tggcaaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcaca 101  Q
    ||||||||| | |||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||| || || ||||||    
T  16121510 tggcaaagactcaagtggaaatgattcccaatgaaggtagctcaatttatcagacaaccactcaagaccttcttggagatgcaca 16121594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 12897032 - 12896971
Alignment:
Q  155 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccc 216  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  12897032 gatatgaagatatcttaagttggtcatgtttttaaatgaatcagagctcaagtatagatccc 12896971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 12897158 - 12897074
Alignment:
Q  17 tggcaaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcaca 101  Q
    ||||||||| | ||||||||||| |||||| | ||||| ||||||||||||||||||||| |||||||||||| | |||||||||    
T  12897158 tggcaaagactcaagtgggaatgcttcccaataaaggtgcctcaatttatcagacaaccattcaagaccttcaaggaggtgcaca 12897074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University