View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_5 (Length: 498)
Name: NF4660_low_5
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 167262 - 167384
Alignment:
| Q |
163 |
atcaagtgattaatgactaaatattcaccacactgagattaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctaccaat |
262 |
Q |
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||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
167262 |
atcaagtgattaatgactaaatattcaccgcaca-aggttaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctatcaat |
167360 |
T |
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| Q |
263 |
caagttatgttcactaagacaatg |
286 |
Q |
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| T |
167361 |
cgagttatgttcactaggacaatg |
167384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 2306724 - 2306647
Alignment:
| Q |
76 |
gcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttc |
153 |
Q |
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| T |
2306724 |
gcatttggtggaatacacgctatcgtatagtgtaattcgtattttccgtggattcagtttcgtgggaaatggcatttc |
2306647 |
T |
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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 401 - 484
Target Start/End: Original strand, 167481 - 167564
Alignment:
| Q |
401 |
atgacattttatgcgtcactgaatggataatattcttcataatataacnnnnnnnnttatgctattactttttccaccctatgc |
484 |
Q |
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| T |
167481 |
atgacattttatggaccactgaatggataatattcttcataatataacaaaaaaaattatgctattactttttccaccctatgc |
167564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 2306796 - 2306748
Alignment:
| Q |
5 |
aaaaccacgaattgtactaaa-tgattttcacaaacattattttaatat |
52 |
Q |
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| T |
2306796 |
aaaatcacgaattctactaaagtgattttcacaaacattattttaatat |
2306748 |
T |
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Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 13332752 - 13332834
Alignment:
| Q |
73 |
gtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc |
155 |
Q |
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| T |
13332752 |
gtagcatttggtggaatacaagccatcgtatagtgtaattcgtattttccgtggattcagtttcgtgggaaatggcatttccc |
13332834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 13332683 - 13332731
Alignment:
| Q |
5 |
aaaaccacgaattgtactaaa-tgattttcacaaacattattttaatat |
52 |
Q |
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| T |
13332683 |
aaaaccacaaattgtactaaagtgattttcacaaacattattttaatat |
13332731 |
T |
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Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 21538187 - 21538269
Alignment:
| Q |
73 |
gtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc |
155 |
Q |
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| T |
21538187 |
gtagcatttggtggaatacacgccagcgtatattgtaattcgtattttccgtggattcagtttcgtgggaaatggtatttccc |
21538269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 21538118 - 21538166
Alignment:
| Q |
5 |
aaaaccacgaattgtactaaa-tgattttcacaaacattattttaatat |
52 |
Q |
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| T |
21538118 |
aaaaccacgaattgtactaaagtgattttcacaaatattattttaatat |
21538166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 37633362 - 37633313
Alignment:
| Q |
106 |
tgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc |
155 |
Q |
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||||||||||||||||||| ||||| |||||| ||| |||||||||||| |
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| T |
37633362 |
tgtaattcgtatttcccgtgaattcactttcgtaggatatggcatttccc |
37633313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 35840792 - 35840875
Alignment:
| Q |
73 |
gtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaat-ggcatttccc |
155 |
Q |
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| T |
35840792 |
gtagcattcggtggaatacatgccatcgtatagtataattcgtattttccgtggattcagtttcgtgggaaatgggcatttccc |
35840875 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 4088006 - 4087928
Alignment:
| Q |
76 |
gcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc |
155 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||| | || ||||||| || ||||||| ||||||| |
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| T |
4088006 |
gcatttggtggaatacacgccatcgtattgtgtaattcgtatttcccttgga-tcagtttagtaggaaatgatatttccc |
4087928 |
T |
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