View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_6 (Length: 483)
Name: NF4660_low_6
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 32229825 - 32229371
Alignment:
| Q |
19 |
caatggactgtcaaactcaaagtcacgatcgatcttgatgtgtgcttttctatatcatcaaaatagaatggtagttttcatatacgttttgatggtttta |
118 |
Q |
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| T |
32229825 |
caatggactgtcaaactcaaagtcacgatcgatcttgatgtgtgcttttctatatcatcaaaatagaatggtagttttcatatacgttttgatggtttta |
32229726 |
T |
|
| Q |
119 |
aacttgtgaaacttcaagcattgtcgaaaaaactcannnnnnnccttcttgtatttcttaatcttcaacaaatttaagtcacatagatcacattttctct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32229725 |
aacttgtgaaacttcaagcattgtcgaaaaaactcattttttt--ttcttgtatttcttaatcttcaacaaatttaagtcacatagatcacattttctct |
32229628 |
T |
|
| Q |
219 |
aaaacacaacaagtacgtgtcttaatctttcaatttatcatatttgaatattcaagttttgtatgttgttgattaatttgatattgttcagggtttgttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32229627 |
aaaacacaacaagtacgtgtcttaatctttcaatttatcatatttgaatattcaagttgtgtatgttgttgattaatttgatattgttcagggtttgttg |
32229528 |
T |
|
| Q |
319 |
atggtacatgaatgattaattgtttgtttctttgtttgtgttgcatgaattgtattattcatatttaacgttgttgattgtgctctaagtattttatgaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32229527 |
atggtacatgaatgattaattgtttgtttctttgtttgtgttgcatgaattgtattattcatatttaacgttgttgattgtgctctaagtattttatgaa |
32229428 |
T |
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| Q |
419 |
aggcttgaatgataatattttttgtcttattctttgttgtagatatcactgatgatgt |
476 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32229427 |
aggcttgaatgataatatttttt-tcttattctttgttgtagatatcactgatgatgt |
32229371 |
T |
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