View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4660_low_7 (Length: 455)
Name: NF4660_low_7
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 5214159 - 5214581
Alignment:
| Q |
18 |
accatgaacaactcatctgcaactcccctaatttatcctcaaatgattattcaaatgactcaaaaacattgctaaaatattatatgatatgatataatat |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
5214159 |
accatgaacaactcatctgaaactcccctaatttatcctcaaatgattattcaaatgactcaaaaacattactaaaatattatat-----gatataatat |
5214253 |
T |
|
| Q |
118 |
agtgccatcaaatagtagtgtaggatcctatttcaactaaattgaattgaacatttcattatcatgaagaaacatggtaatccgttgaaataatttccaa |
217 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5214254 |
agtgtcatcaaatagtagtgtagggtcctatttcaactaaattgaattgaacatttcattatcatgaagaaacatggtaatccgttgaaataattttcaa |
5214353 |
T |
|
| Q |
218 |
cgggctataattgtttttggtacttggcatgttggagctagatgttgattggcattttctcatcaatgaggtgtcaaaatctatgattggattttaccta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5214354 |
cgggctataattgtttttggtacttggcatgttggagctagatgttgattggcattttcttatcaatgaggtgtcaaaatctatgattggattttaccta |
5214453 |
T |
|
| Q |
318 |
accaataatgtcatttttgtctaacttcaaattgataattagccaaaaaattattcacatggacatgtttcattgctagcatcacaggcgataaatattt |
417 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
5214454 |
accaataatgtcatttttgtctagcttcaaattgataattagccaaaaaattattcacatggacatgtttcattactagcatcacaggcgataattattt |
5214553 |
T |
|
| Q |
418 |
gcttccccgacctcggtagcgtcctttg |
445 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
5214554 |
gcttccccgaccttggtagcgtcctttg |
5214581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University