View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4660_low_9 (Length: 436)

Name: NF4660_low_9
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4660_low_9
NF4660_low_9
[»] chr1 (10 HSPs)
chr1 (63-356)||(41606935-41607228)
chr1 (18-63)||(1658548-1658593)
chr1 (382-414)||(41606877-41606909)
chr1 (21-63)||(5057565-5057607)
chr1 (25-63)||(14191264-14191302)
chr1 (21-63)||(39853325-39853367)
chr1 (21-63)||(49289228-49289270)
chr1 (21-62)||(2684334-2684375)
chr1 (18-63)||(40850384-40850429)
chr1 (21-62)||(48481215-48481256)
[»] chr5 (4 HSPs)
chr5 (21-68)||(9530728-9530775)
chr5 (21-63)||(13588863-13588905)
chr5 (21-63)||(25684429-25684471)
chr5 (21-62)||(31236588-31236629)
[»] scaffold0121 (1 HSPs)
scaffold0121 (21-63)||(13969-14011)
[»] chr7 (1 HSPs)
chr7 (21-63)||(32186422-32186464)
[»] chr3 (4 HSPs)
chr3 (21-63)||(54009272-54009314)
chr3 (21-64)||(14460550-14460593)
chr3 (18-63)||(50465835-50465880)
chr3 (19-63)||(347054-347098)
[»] chr2 (6 HSPs)
chr2 (21-63)||(6657811-6657853)
chr2 (21-64)||(5084837-5084880)
chr2 (21-64)||(7504020-7504063)
chr2 (21-63)||(41840020-41840062)
chr2 (21-62)||(36947482-36947523)
chr2 (21-65)||(36191967-36192011)
[»] chr6 (2 HSPs)
chr6 (21-68)||(34315118-34315165)
chr6 (18-63)||(9226564-9226609)
[»] chr4 (4 HSPs)
chr4 (24-63)||(48549663-48549702)
chr4 (21-63)||(23639235-23639277)
chr4 (21-62)||(33612889-33612930)
chr4 (21-65)||(38955039-38955083)
[»] chr8 (2 HSPs)
chr8 (21-61)||(38971830-38971870)
chr8 (21-61)||(39002928-39002968)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 63 - 356
Target Start/End: Complemental strand, 41607228 - 41606935
Alignment:
Q  63 taattagaaacttaataataatataattagcagcaaaaatagcaacagtatttcaggaaataaaacagtaaataatactagtattttatatatctatctc 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41607228 taattagaaacttaataataatataattagcagcaaaaatagcaacagtatttcaggaaataaaacagtaaataatactagtattttatatatctatctc 41607129  T
Q  163 cttgcctaggtttgaaaggatgtaatttatgcttttcccttacaaagtacttgagtcttttctactacttaaaaatcatgtcctttcctctctcataata 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41607128 cttgcctaggtttgaaaggatgtaatttatgcttttcccttacaaagtacttgagtcttttctactacttaaaaatcatgtcctttcctctctcataata 41607029  T
Q  263 cattacctagctatagctacatagatgagtgagtctaacttttaagactagcggtagactcggatcctgtctcctttcatttcagtttcatacc 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41607028 cattacctagctatagctacatagatgagtgagtctaacttttaagactagcggtagactcggatcctgtctcctttcatttcagtttcatacc 41606935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 1658593 - 1658548
Alignment:
Q  18 gaataccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    |||||||||||||||||||||| ||||||||| |||||| ||||||    
T  1658593 gaataccggtacactcaaaattgtgggtgtaccatagaagttccct 1658548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 414
Target Start/End: Complemental strand, 41606909 - 41606877
Alignment:
Q  382 ctcatttcttcatataaccatccaatccttctt 414  Q
    |||||||||||||||||||||||||||||||||    
T  41606909 ctcatttcttcatataaccatccaatccttctt 41606877  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 5057565 - 5057607
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||    
T  5057565 taccggtacactcaaaattgtgggtgtaccatagaagttccct 5057607  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 14191264 - 14191302
Alignment:
Q  25 ggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  14191264 ggtacactcaaaattatgagtgtactatagaagttccct 14191302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 39853325 - 39853367
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    |||||||||||||||||||||| |||||| |||||| ||||||    
T  39853325 taccggtacactcaaaattatgagtgtaccatagaagttccct 39853367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 49289270 - 49289228
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    ||||||||||||||||||| || |||||| |||||||||||||    
T  49289270 taccggtacactcaaaattgtgagtgtaccatagaaattccct 49289228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 2684334 - 2684375
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccc 62  Q
    |||||||||||||||||||||| |||||| |||||| |||||    
T  2684334 taccggtacactcaaaattatgagtgtaccatagaagttccc 2684375  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 40850384 - 40850429
Alignment:
Q  18 gaataccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    |||||||||||||||||||||| || |||||| |||||| ||||||    
T  40850384 gaataccggtacactcaaaattgtgagtgtaccatagaagttccct 40850429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 48481215 - 48481256
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccc 62  Q
    ||||||||||||||||||| ||||||||| |||||| |||||    
T  48481215 taccggtacactcaaaattgtgggtgtaccatagaagttccc 48481256  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 9530728 - 9530775
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccctaatta 68  Q
    ||||||||||||||||||| ||||||||| |||||| |||||||||||    
T  9530728 taccggtacactcaaaattgtgggtgtaccatagaagttccctaatta 9530775  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 13588905 - 13588863
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||    
T  13588905 taccggtacactcaaaattgtgggtgtaccatagaagttccct 13588863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 25684429 - 25684471
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    |||||||||||||||||||||| |||||| |||||| ||||||    
T  25684429 taccggtacactcaaaattatgagtgtaccatagaagttccct 25684471  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 31236629 - 31236588
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccc 62  Q
    ||||||||||||||||||| || |||||| ||||||||||||    
T  31236629 taccggtacactcaaaattgtgagtgtaccatagaaattccc 31236588  T

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Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 13969 - 14011
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    ||||||||||||||||||||||||||||| |||||| ||||||    
T  13969 taccggtacactcaaaattatgggtgtaccatagaagttccct 14011  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 32186464 - 32186422
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  32186464 taccggtacactcaaaattgtgagtgtactatagaaattccct 32186422  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 54009272 - 54009314
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  54009272 taccggtacactcaaaattatggatgtaccatagaaattccct 54009314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 14460550 - 14460593
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattcccta 64  Q
    |||||||||||||||||||||| |||||| |||||| |||||||    
T  14460550 taccggtacactcaaaattatgagtgtaccatagaagttcccta 14460593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 50465835 - 50465880
Alignment:
Q  18 gaataccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    |||||||||||||||||||||| || |||||| |||||| ||||||    
T  50465835 gaataccggtacactcaaaattgtgagtgtaccatagaagttccct 50465880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 347054 - 347098
Alignment:
Q  19 aataccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    |||||| ||||||||||||||||| |||||| |||||| ||||||    
T  347054 aataccagtacactcaaaattatgagtgtaccatagaagttccct 347098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 6657811 - 6657853
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    ||||||||||||||||||||||||||||| |||||| ||||||    
T  6657811 taccggtacactcaaaattatgggtgtaccatagaagttccct 6657853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 5084880 - 5084837
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattcccta 64  Q
    |||||||||||||||||||||| |||||| |||||| |||||||    
T  5084880 taccggtacactcaaaattatgagtgtacgatagaagttcccta 5084837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 7504063 - 7504020
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattcccta 64  Q
    ||||||||||||||||||| ||||||||| |||||| |||||||    
T  7504063 taccggtacactcaaaattgtgggtgtaccatagaagttcccta 7504020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 41840020 - 41840062
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||    
T  41840020 taccggtacactcaaaattatggatgtaccatagaagttccct 41840062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 36947523 - 36947482
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccc 62  Q
    ||||||||||||||||||| || |||||| ||||||||||||    
T  36947523 taccggtacactcaaaattgtgagtgtaccatagaaattccc 36947482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 36192011 - 36191967
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccctaa 65  Q
    |||||||||||||||||||||   ||||| |||||||||||||||    
T  36192011 taccggtacactcaaaattataaatgtaccatagaaattccctaa 36191967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 34315165 - 34315118
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccctaatta 68  Q
    ||||| ||||||||||||| ||||||||| |||||| |||||||||||    
T  34315165 taccgatacactcaaaattgtgggtgtaccatagaagttccctaatta 34315118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 9226564 - 9226609
Alignment:
Q  18 gaataccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    |||||||||||||||||||||| ||||||||  |||||| ||||||    
T  9226564 gaataccggtacactcaaaattgtgggtgtagcatagaagttccct 9226609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 48549702 - 48549663
Alignment:
Q  24 cggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  48549702 cggtacactcaaaattgtgagtgtactatagaaattccct 48549663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 23639277 - 23639235
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccct 63  Q
    |||||||||||| ||||||||| |||||| |||||||||||||    
T  23639277 taccggtacacttaaaattatgagtgtaccatagaaattccct 23639235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 33612889 - 33612930
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccc 62  Q
    ||||||||||||||||||| ||||||||| |||||| |||||    
T  33612889 taccggtacactcaaaattgtgggtgtaccatagaagttccc 33612930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 38955083 - 38955039
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattccctaa 65  Q
    ||||||||||||||||||| || |||||| |||||| ||||||||    
T  38955083 taccggtacactcaaaattgtgagtgtaccatagaagttccctaa 38955039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 38971830 - 38971870
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattcc 61  Q
    ||||||||||||||||||| || ||||||||||||| ||||    
T  38971830 taccggtacactcaaaattgtgagtgtactatagaagttcc 38971870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 39002928 - 39002968
Alignment:
Q  21 taccggtacactcaaaattatgggtgtactatagaaattcc 61  Q
    ||||||||||||||||||| || ||||||||||||| ||||    
T  39002928 taccggtacactcaaaattgtgagtgtactatagaagttcc 39002968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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