View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4661-Insertion-1 (Length: 805)
Name: NF4661-Insertion-1
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661-Insertion-1 |
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| [»] chr7 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 517; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 161 - 805
Target Start/End: Complemental strand, 41319320 - 41318674
Alignment:
| Q |
161 |
tattaagtagtgatctaatgatgtccttcaccaataagtgttacacaacctatttcgcctacaatgcaatctctgaacatgaacaaagtcactcgaggat |
260 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41319320 |
tattaagtagtgatctaatgatgtccttcaccaataagtgttacacaacctatttcgcctacaatgcaatctctgaacatgaacaaagtcactcgaggat |
41319221 |
T |
|
| Q |
261 |
tcctttgtaactctgggctatctaagagacctacgttcgaataatatattttctagtcttcttnnnnnnnnn-gacagtctatcaagagtccattttcga |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
41319220 |
tcctttgtaactctgggctatctaagagacttacgttcgaataataaattttctagtcttcttaaaaaaaaaagacactctatcaagagtccattttcga |
41319121 |
T |
|
| Q |
360 |
agttatttgtatccttttaattctctcacaatatctcctgtgattccaaaacttattttgaatcaactagatctctat--tacttttaatacattagcaa |
457 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41319120 |
agttaattgtatccttttaattctctcacaatatctcctgtgattccaaaacttattttgaatcaactagatctctatattacttttaatacattagcag |
41319021 |
T |
|
| Q |
458 |
ctaaaataaacccaaaaacaactaagattacctcggtctcaaaacatagaaggccattagatacnnnnnnnnctcactcaacggaagagctttgagaatc |
557 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
41319020 |
ctaaaataaacccaaaaacaactaagattacctcagtctcaaaacatagaag-ccattagatacttttttttctcactcaacggaagagctttgagaatc |
41318922 |
T |
|
| Q |
558 |
gctattttgtttggattgtcaatcaaccaattgattgctttatagcgtagtgtgtcatcaatatcaataatcatctccatttcattcaacacttcttgca |
657 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41318921 |
gctattttgtttggattgtcaatcaaccaattgattgctttatagcgtagtgtgtcgtcaatatcaataatcatctccatttcattcaacacttcttgca |
41318822 |
T |
|
| Q |
658 |
cctcttttggagtatttccttccatccnnnnnnnactaatttgcacaaagtctttcaatatttcagcaacttctctcatagagtcgatcatcccctcttt |
757 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41318821 |
cctcttttggagtatttccttccatcctttttttactaatttgcacaaagtctttcaatatctcagcaacttctctcatagagtcgatcatcccctcttt |
41318722 |
T |
|
| Q |
758 |
gtctctgcccttattagcacaagtacattgtacttttttctttgttgc |
805 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41318721 |
gtctctgcccttattagcacaagtacattgtacttttttctttgttgc |
41318674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 41319595 - 41319447
Alignment:
| Q |
8 |
aacataactagagtccaactcagggtatcatccttcaatcgtcaactgcacaaattaaagcacgaagttaggaagnnnnnnnnntcatatattgcattgt |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41319595 |
aacataactagagtccaactcagggtatcatccttcaatcgtcaactgcacaaattaaagcacgaagttaggaag--aaaaaaatcatatattgcattgt |
41319498 |
T |
|
| Q |
108 |
cttaaacccatgtataccaacccaactaacaaaagcacaagtgaagtatca |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41319497 |
cttaaacccatgtataccaacccaactaacaaaagcacaattgaagtatca |
41319447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 533 - 603
Target Start/End: Complemental strand, 22248662 - 22248592
Alignment:
| Q |
533 |
actcaacggaagagctttgagaatcgctattttgtttggattgtcaatcaaccaattgattgctttatagc |
603 |
Q |
| |
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|||| ||||||| |||||||||||| ||||||| | ||||| ||||||||||||||||||| |||||||| |
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| T |
22248662 |
actcgacggaagtgctttgagaatcagtattttgctcggattttcaatcaaccaattgattgatttatagc |
22248592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 659
Target Start/End: Original strand, 40769922 - 40769967
Alignment:
| Q |
614 |
atcaatatcaataatcatctccatttcattcaacacttcttgcacc |
659 |
Q |
| |
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||||||||||||| |||||| ||||||||| ||||||||||||||| |
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| T |
40769922 |
atcaatatcaatagtcatcttcatttcattaaacacttcttgcacc |
40769967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 535 - 684
Target Start/End: Original strand, 37311394 - 37311543
Alignment:
| Q |
535 |
tcaacggaagagctttgagaatcgctattttgtttggattgtcaatcaaccaattgattgctttatagcgtagtgtgtcatcaatatcaataatcatctc |
634 |
Q |
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||||||||||||||||||||||||| | | |||||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||||| |
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| T |
37311394 |
tcaacggaagagctttgagaatcgccaatctgtttggattttcaatcaaccaattgattgctttataacgtatagtatcatcaatatcaataatcatctt |
37311493 |
T |
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| Q |
635 |
catttcattcaacacttcttgcacctcttttggagtatttccttccatcc |
684 |
Q |
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||||||||||||||||||||||||| || | ||| |||||||||||||| |
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| T |
37311494 |
catttcattcaacacttcttgcaccatttcttgagaatttccttccatcc |
37311543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 7e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 533 - 805
Target Start/End: Complemental strand, 44612941 - 44612669
Alignment:
| Q |
533 |
actcaacggaagagctttgagaatcgctattttgtttggattgtcaatcaaccaattgattgctttatagcgtagtgtgtcatcaatatcaataatcatc |
632 |
Q |
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|||| ||| ||| |||||||||| || ||||||| | ||||| |||||||||||||||||||||||||||| | || |||||||||||| ||||||| |
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| T |
44612941 |
actcgacgaaagtgctttgagaaccggtattttgctcggattttcaatcaaccaattgattgctttatagctttgttcttcatcaatatcagtaatcatt |
44612842 |
T |
|
| Q |
633 |
tccatttcattcaacacttcttgcacctcttttggagtatttccttccatccnnnnnnnactaatttgcacaaagtctttcaatatttcagcaacttctc |
732 |
Q |
| |
|
||||||||| |||| |||||||||||| || ||| |||||||||||| | ||||| |||||||||||| |||||| ||| || |||||| |
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| T |
44612841 |
tccatttcagtcaaaacttcttgcaccactgcctgagcatttccttccattctttttctactaacttgcacaaagtccttcaatgattcggctacttctt |
44612742 |
T |
|
| Q |
733 |
tcatagagtcgatcatcccctctttgtctctgcccttattagcacaagtacattgtacttttttctttgttgc |
805 |
Q |
| |
|
||||||||| |||||||||||| | ||| | ||||||||||||| ||| ||||||| |||||||||||||| |
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| T |
44612741 |
tcatagagttcatcatcccctctctatctttacccttattagcacgagtgaattgtacctttttctttgttgc |
44612669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 625 - 805
Target Start/End: Original strand, 9202 - 9382
Alignment:
| Q |
625 |
taatcatctccatttcattcaacacttcttgcacctcttttggagtatttccttccatccnnnnnnnactaatttgcacaaagtctttcaatatttcagc |
724 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||||| | ||| |||||||||||| | ||||| |||||||||||| |||||| ||| || |
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| T |
9202 |
taatcatttccatttcagtcaaaacttcttgcaccaatgcctgagcatttccttccattctttttctactaacttgcacaaagtccttcaatgattcggc |
9301 |
T |
|
| Q |
725 |
aacttctctcatagagtcgatcatcccctctttgtctctgcccttattagcacaagtacattgtacttttttctttgttgc |
805 |
Q |
| |
|
|||||| ||||||||| | |||||||||| | | | | ||||||||||| | ||| ||||||| |||||||||||||| |
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|
| T |
9302 |
tacttctttcatagagttcaccatcccctctctatatttacccttattagcccgagtgaattgtacctttttctttgttgc |
9382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 726 - 805
Target Start/End: Complemental strand, 1993038 - 1992959
Alignment:
| Q |
726 |
acttctctcatagagtcgatcatcccctctttgtctctgcccttattagcacaagtacattgtacttttttctttgttgc |
805 |
Q |
| |
|
|||||||||||||||| |||||||||| | | ||| | ||||||||||||| ||| ||||||| |||||||||||||| |
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| T |
1993038 |
acttctctcatagagttcatcatcccctatctatctttacccttattagcacgagtgaattgtacctttttctttgttgc |
1992959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 612
Target Start/End: Original strand, 4283627 - 4283704
Alignment:
| Q |
535 |
tcaacggaagagctttgagaatcgctattttgtttggattgtcaatcaaccaattgattgctttatagcgtagtgtgt |
612 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||| | |||||||| |
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|
| T |
4283627 |
tcaatggaggagctttgagaatcgtcattttgttcaaattttcaatcaaccaattgattgcgttataacatagtgtgt |
4283704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 530 - 568
Target Start/End: Original strand, 30938841 - 30938879
Alignment:
| Q |
530 |
ctcactcaacggaagagctttgagaatcgctattttgtt |
568 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||||||| |
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| T |
30938841 |
ctcactcaacgaaagagctttgagaatcgttattttgtt |
30938879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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