View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661-Insertion-2 (Length: 646)
Name: NF4661-Insertion-2
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661-Insertion-2 |
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| [»] chr5 (4 HSPs) |
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| [»] scaffold0028 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 91 - 646
Target Start/End: Complemental strand, 38865133 - 38864579
Alignment:
| Q |
91 |
aaaagagataattatctctggtgaatcttcccatagtcccttactaatacaaggtcgaatcacgcctcttcttggtatgtgcttctgggtttccttttct |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38865133 |
aaaagagataattatctctggtgaatcttcccatagtcccttactaatacaaggtcgaatcatgcctcttcttggtatgtgcttctgggtttccttttct |
38865034 |
T |
|
| Q |
191 |
catcattgcaacaaattcatcgtagttaatccgaccatcctgcacaaacatgcaaatttcatcgtaagttttctgaaataagaatcaaatattaagtgca |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38865033 |
catcattgcaacaaattcatcgtagttaatccgaccatcctgcacaaacatgcaaatttcatcgtaagttttctgaaataagaatcaaatattaagtgca |
38864934 |
T |
|
| Q |
291 |
tcatgacactaacaaaatacttcttatggtctcgattacaagcaaaagaaaaactcatttaatggtctaaaatataaccagtcagtcctagacttacgtt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38864933 |
tcatgacactaacaaaatacttcttatggtctcgattataagcaaaagaaaaactcatttaatggtctaaaatataatcagtcagtcctagacttacgtt |
38864834 |
T |
|
| Q |
391 |
atctgcatcaacttctgaaatgatttcttttatgtacctgccatcatgcatgttatactcatggagagcttgctctagttcttcaatggtaatgtaccta |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38864833 |
atctgcatcaacttctgaaatgatttcttttatgtacctaccatcatgcatgttatactcatggagagcttgctctagttcttcaatggtaatgtaccta |
38864734 |
T |
|
| Q |
491 |
attatggaaaagcaatgtgattagaagatataacaccaattagtatccaaatgagggccaaatatatattcaaccaagttgattttattgatttatttaa |
590 |
Q |
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| T |
38864733 |
attatggaaaagcaatgtgattagaagatataacaccaattagtatccaaatgagggccaaatatatattcaaccaagttgattttattgatttatttaa |
38864634 |
T |
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| Q |
591 |
attttctttacccgctgttatctttatcgaagtattggaagggcagcataaacatg |
646 |
Q |
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| T |
38864633 |
attttctttacccgttgttatctttatcgaagtattggaa-ggcagtataaacatg |
38864579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 319 - 646
Target Start/End: Original strand, 38808487 - 38808810
Alignment:
| Q |
319 |
gtctcgattacaagcaaaagaaaaactcatttaatggtctaaaatataaccagtcagtcctagacttacgttatctgcatcaacttctgaaatgatttct |
418 |
Q |
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|||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38808487 |
gtcttgattataagcaaaagaaaaactcattcaatggtctaaaatataactagtcagtgctagacttacgttatctgcatcaacttctgaaatgatttct |
38808586 |
T |
|
| Q |
419 |
tttatgtacctgccatcatgcatgttatactcatggagagcttgctctagttcttcaatggtaatgtacctaattatggaaaagcaatgtgattagaaga |
518 |
Q |
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| T |
38808587 |
tttatgtccctgccgtcatgcatgttatactcatggagagcttgctctagttcttcaatggtgatgtacctaattatggaaaagcagtgagatcagaaga |
38808686 |
T |
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| Q |
519 |
tataacaccaattagtatccaaatgagggccaaatatatattcaaccaagttgattttattgatttatttaaattttctttacccgctgttatctttatc |
618 |
Q |
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| | | ||||||||||||||| || || ||||||||||| |||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
38808687 |
ttt--gaacaattagtatccaaaggaagggcaaatatatatccaaccatgttggttttacggatttattt-aattttctttacccgctgttatctttatc |
38808783 |
T |
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| Q |
619 |
gaagtattggaagggcagcataaacatg |
646 |
Q |
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| T |
38808784 |
gaagaattggaa-ggcagtataaacatg |
38808810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 38808318 - 38808471
Alignment:
| Q |
92 |
aaagagataattatctctggtgaatcttcccatagtcccttactaatacaaggtcgaatcacgcctcttcttggtatgtgcttctgggtttccttttctc |
191 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | | |
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| T |
38808318 |
aaagagataattatctctgttgaatcttcccatagacccttactaatacaaggtcgaatcacgcctcttcttggtatttgcttctgggtttcctttgccc |
38808417 |
T |
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| Q |
192 |
atcattgcaacaaattcatcgtagttaatccgaccatcctgcacaaacatgcaa |
245 |
Q |
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| T |
38808418 |
atcattgcaacaaattcatcgtagttaatccgaccatcctgcacagacatgcaa |
38808471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 38865207 - 38865166
Alignment:
| Q |
8 |
caagctttacattctgagctttttcactcatcagcaatctga |
49 |
Q |
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| T |
38865207 |
caagctttacattctgagctttttcactcatcagcaatctga |
38865166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 72646 - 72735
Alignment:
| Q |
147 |
gaatcacgcctcttcttggtatgtgcttctgggtttccttttctcatcattgcaacaaattcatcgtagttaatccgaccatcctgcaca |
236 |
Q |
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| T |
72646 |
gaatcacgcctcttcttagtatgagcttccggatttccttttctcatcattgcagcaaattcatcatagttaatacgtccatcctgcaca |
72735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 382 - 489
Target Start/End: Original strand, 72922 - 73029
Alignment:
| Q |
382 |
acttacgttatctgcatcaacttctgaaatgatttcttttatgtacctgccatcatgcatgttatactcatggagagcttgctctagttcttcaatggta |
481 |
Q |
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|||||| |||||| ||||||||||| || || ||||| |||| ||||||||||||||||| || ||| |||||||||| |||||||||||| ||||| |
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| T |
72922 |
acttacattatctccatcaacttcttgaagtatctctttgatgtctctgccatcatgcatgttgtattcacggagagcttgatctagttcttcagtggta |
73021 |
T |
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| Q |
482 |
atgtacct |
489 |
Q |
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||| |||| |
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| T |
73022 |
atgaacct |
73029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 597 - 632
Target Start/End: Original strand, 73150 - 73185
Alignment:
| Q |
597 |
tttacccgctgttatctttatcgaagtattggaagg |
632 |
Q |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
73150 |
tttacccgctgttatctttatcaaagtattggaagg |
73185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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