View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4661-Insertion-3 (Length: 313)

Name: NF4661-Insertion-3
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4661-Insertion-3
NF4661-Insertion-3
[»] chr6 (11 HSPs)
chr6 (14-221)||(1126155-1126362)
chr6 (28-148)||(31262324-31262446)
chr6 (33-82)||(5738529-5738578)
chr6 (34-98)||(23388545-23388609)
chr6 (33-79)||(11410379-11410425)
chr6 (26-86)||(2371972-2372032)
chr6 (34-98)||(9953581-9953645)
chr6 (28-101)||(23007774-23007848)
chr6 (28-101)||(23780516-23780590)
chr6 (34-80)||(28848473-28848519)
chr6 (32-92)||(14969268-14969328)
[»] chr2 (14 HSPs)
chr2 (14-197)||(38005609-38005792)
chr2 (52-221)||(30275121-30275290)
chr2 (14-98)||(4577447-4577531)
chr2 (33-79)||(29435365-29435411)
chr2 (28-168)||(38070204-38070342)
chr2 (33-98)||(15704429-15704494)
chr2 (14-95)||(26365530-26365611)
chr2 (33-97)||(15719683-15719747)
chr2 (36-82)||(10600575-10600621)
chr2 (14-103)||(38325959-38326049)
chr2 (14-103)||(38326710-38326800)
chr2 (33-97)||(1507093-1507156)
chr2 (33-79)||(25139377-25139423)
chr2 (33-97)||(1503889-1503952)
[»] chr4 (15 HSPs)
chr4 (16-197)||(19864914-19865095)
chr4 (14-197)||(19859948-19860129)
chr4 (14-95)||(37103641-37103722)
chr4 (33-81)||(40617139-40617187)
chr4 (28-81)||(5681058-5681111)
chr4 (33-81)||(27013892-27013940)
chr4 (14-83)||(5672507-5672577)
chr4 (14-74)||(5670198-5670258)
chr4 (33-97)||(11703043-11703107)
chr4 (33-82)||(12237900-12237949)
chr4 (32-92)||(18859377-18859437)
chr4 (36-83)||(10385575-10385622)
chr4 (32-67)||(33400775-33400810)
chr4 (33-101)||(7642771-7642839)
chr4 (46-78)||(33410402-33410434)
[»] chr5 (14 HSPs)
chr5 (14-99)||(21333107-21333191)
chr5 (14-99)||(21336123-21336207)
chr5 (33-82)||(22937382-22937431)
chr5 (28-83)||(28441574-28441629)
chr5 (26-84)||(14376247-14376305)
chr5 (14-92)||(26547692-26547770)
chr5 (14-92)||(26551251-26551329)
chr5 (14-103)||(34653191-34653281)
chr5 (47-101)||(43491357-43491411)
chr5 (26-103)||(3194789-3194866)
chr5 (14-86)||(32837645-32837717)
chr5 (33-98)||(40916178-40916241)
chr5 (37-83)||(2452949-2452995)
chr5 (54-92)||(40800244-40800282)
[»] scaffold0014 (2 HSPs)
scaffold0014 (28-98)||(226949-227019)
scaffold0014 (58-98)||(221659-221699)
[»] chr8 (12 HSPs)
chr8 (28-98)||(31984591-31984661)
chr8 (14-92)||(5963855-5963933)
chr8 (28-98)||(31980956-31981026)
chr8 (34-98)||(18721727-18721791)
chr8 (14-86)||(45155696-45155768)
chr8 (40-101)||(14421350-14421411)
chr8 (33-98)||(18696385-18696450)
chr8 (34-98)||(25595103-25595167)
chr8 (34-79)||(25591919-25591964)
chr8 (34-79)||(23613169-23613214)
chr8 (33-79)||(452767-452813)
chr8 (28-64)||(30645103-30645139)
[»] scaffold0214 (3 HSPs)
scaffold0214 (14-98)||(19653-19737)
scaffold0214 (14-90)||(13211-13287)
scaffold0214 (14-90)||(27227-27303)
[»] chr7 (7 HSPs)
chr7 (14-92)||(11825797-11825875)
chr7 (14-99)||(8397451-8397535)
chr7 (26-99)||(8276602-8276674)
chr7 (14-86)||(26557111-26557184)
chr7 (28-82)||(10431933-10431987)
chr7 (14-98)||(23467524-23467608)
chr7 (36-76)||(22256875-22256915)
[»] chr1 (4 HSPs)
chr1 (14-86)||(1950880-1950952)
chr1 (14-92)||(37641466-37641544)
chr1 (33-79)||(49715985-49716031)
chr1 (33-79)||(49719468-49719514)
[»] chr3 (15 HSPs)
chr3 (36-106)||(2280077-2280147)
chr3 (14-86)||(10107010-10107082)
chr3 (35-86)||(10884568-10884619)
chr3 (14-96)||(17532046-17532128)
chr3 (14-79)||(30158478-30158543)
chr3 (26-78)||(44508425-44508477)
chr3 (14-62)||(55032263-55032311)
chr3 (32-101)||(36037420-36037489)
chr3 (17-96)||(17529165-17529244)
chr3 (14-62)||(55035272-55035320)
chr3 (34-97)||(9154413-9154476)
chr3 (36-99)||(9392433-9392496)
chr3 (44-83)||(16185066-16185105)
chr3 (14-82)||(25888851-25888915)
chr3 (36-97)||(42354869-42354931)
[»] scaffold0381 (1 HSPs)
scaffold0381 (33-82)||(5844-5893)
[»] scaffold0062 (2 HSPs)
scaffold0062 (33-98)||(53341-53406)
scaffold0062 (33-97)||(68240-68304)
[»] scaffold0360 (2 HSPs)
scaffold0360 (36-82)||(2092-2138)
scaffold0360 (40-82)||(5922-5963)
[»] scaffold0035 (1 HSPs)
scaffold0035 (33-82)||(62145-62194)
[»] scaffold0080 (1 HSPs)
scaffold0080 (34-96)||(26803-26865)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 1126155 - 1126362
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttctcttcctcgtgct 113  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1126155 agctagacatagtaaaaggaataaacaacatagtaaaaacaataaaccgatagagttccgtcgttgccggctttactcctcaatttctcttcctcgtgct 1126254  T
Q  114 actattgatgttgtttttctataaccatgtgcctcctagccgtctcgtgatgcgtacctctcttttctttcccaatcatgaatcggctcctgtgtgccaa 213  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1126255 actgttgatgttgtttttctataactatgtgcctcctagccgtctcgtgatgcgtgcctctcttttctttcccaatcatgaatcggctcctgtgtgccaa 1126354  T
Q  214 aacgtgaa 221  Q
    ||||||||    
T  1126355 aacgtgaa 1126362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 31262446 - 31262324
Alignment:
Q  28 aaaggaataaacaacatagtaaagaaaata--aaccgatagagttccgtcgttgccggctttactcctcaatttctcttcctcgtgctactattgatgtt 125  Q
    |||| |||||||||||||||| ||||||||  |||| |||||||||| ||||||||||||| |||| ||||||| ||||| | | |||| | ||||||||    
T  31262446 aaagaaataaacaacatagtagagaaaatataaaccaatagagttccatcgttgccggcttcactcttcaatttatcttctttgcgctattgttgatgtt 31262347  T
Q  126 gtttttctataaccatgtgcctc 148  Q
    |||| |||| | |||||||||||    
T  31262346 gtttctctaaatccatgtgcctc 31262324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 5738529 - 5738578
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccg 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5738529 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccg 5738578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 23388545 - 23388609
Alignment:
Q  34 ataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||||    
T  23388545 ataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgtcggcgttgctcctcaatt 23388609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 11410425 - 11410379
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11410425 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 11410379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 2372032 - 2371972
Alignment:
Q  26 taaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctt 86  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||| |||||| |||||||    
T  2372032 taaaagaaataaacagcatagtaaaaaaaataaaccgatagagttctgtcgttaccggctt 2371972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 9953645 - 9953581
Alignment:
Q  34 ataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    |||||||||||| |||| ||||||| ||||||||||| |||||||| |||| || ||||||||||    
T  9953645 ataaacaacataataaaaaaaataagccgatagagtttcgtcgttgtcggcgttgctcctcaatt 9953581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 23007848 - 23007774
Alignment:
Q  28 aaaggaataaacaacatagtaaagaaaa-taaaccgatagagttccgtcgttgccggctttactcctcaatttct 101  Q
    ||||||||||||||| ||||||| |||| |||| ||||||||||  ||||||| ||| ||| |||||||||||||    
T  23007848 aaaggaataaacaacgtagtaaaaaaaaataaatcgatagagttatgtcgttgtcggttttgctcctcaatttct 23007774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 23780516 - 23780590
Alignment:
Q  28 aaaggaataaacaacatagtaaagaaaa-taaaccgatagagttccgtcgttgccggctttactcctcaatttct 101  Q
    ||||||||||||||| ||||||| |||| |||| ||||||||||  ||||||| ||| ||| |||||||||||||    
T  23780516 aaaggaataaacaacgtagtaaaaaaaaataaatcgatagagttatgtcgttgtcggttttgctcctcaatttct 23780590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 28848519 - 28848473
Alignment:
Q  34 ataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgc 80  Q
    |||||||||||||||||||||||||| |||| ||||||| |||||||    
T  28848519 ataaacaacatagtaaagaaaataaatcgatggagttccatcgttgc 28848473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 14969328 - 14969268
Alignment:
Q  32 gaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcc 92  Q
    ||||||||||  || |||| ||||||||| ||||||||| |||||||||||||||| ||||    
T  14969328 gaataaacaatttaataaaaaaaataaactgatagagtttcgtcgttgccggctttgctcc 14969268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 38005609 - 38005792
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttctcttcctcgtgct 113  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38005609 agctagacatagttaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttctcttcctcgtgct 38005708  T
Q  114 actattgatgttgtttttctataaccatgtgcctcctagccgtctcgtgatgcgtacctctcttttctttcccaatcatgaatc 197  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  38005709 actgttgatgttgtttttctataaccatgtgcctcctagccgtcttgtgatgcgtgcctctcttttctttcccaatcatgaatc 38005792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 52 - 221
Target Start/End: Original strand, 30275121 - 30275290
Alignment:
Q  52 aaaataaaccgatagagttccgtcgttgccggctttactcctcaatttctcttcctcgtgctactattgatgttgtttttctataaccatgtgcctccta 151  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30275121 aaaataaaccgatagagttccgtcgttgccgtctttactcctcaatttctcttcctcgtgctactgttgatgttgtttttctataaccatgtgcctccta 30275220  T
Q  152 gccgtctcgtgatgcgtacctctcttttctttcccaatcatgaatcggctcctgtgtgccaaaacgtgaa 221  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30275221 gccgtctcgtgatgcgtgcctctcttttctttcccaatcatgattcggctcctgtgtgccaaaacgtgaa 30275290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 4577531 - 4577447
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  4577531 agctagacataattaaagaaataaacaacatagtaaagaaaataaatcgatagagcttcgtcgttgccggctttactcctcaatt 4577447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 29435411 - 29435365
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  29435411 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 29435365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 38070342 - 38070204
Alignment:
Q  28 aaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttctcttc-ctcgtgctactattgatgttg 126  Q
    ||||||||||||||||| ||||| |||| || ||||| ||||||| ||||||  |||||||||||||||||||| |||  ||  |||| | |||||||||    
T  38070342 aaaggaataaacaacatcgtaaaaaaaa-aatccgatggagttccatcgttgtgggctttactcctcaatttcttttcaatc--gctattgttgatgttg 38070246  T
Q  127 tttttctataaccatgtgcctcctagccgtctcgtgatgcgt 168  Q
    |||||| ||| ||||||||||||   | ||||||||||||||    
T  38070245 tttttccatatccatgtgcctccctcctgtctcgtgatgcgt 38070204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 15704429 - 15704494
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||  | |||| ||||||||||    
T  15704429 aataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaatt 15704494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 26365611 - 26365530
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctca 95  Q
    ||||||||||  |||||||||||||||||||| |||| ||||||||||||||||||| | |||||| | ||||| |||||||    
T  26365611 agctagacatgataaaaggaataaacaacataataaaaaaaataaaccgatagagtttcatcgttgtcagctttgctcctca 26365530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 15719683 - 15719747
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaat 97  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||  | |||| |||||||||    
T  15719683 aataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaat 15719747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 10600621 - 10600575
Alignment:
Q  36 aaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccg 82  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||    
T  10600621 aaacaatatagtaaagaaaataaaccgataaagttccgtcgttgccg 10600575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 38326049 - 38325959
Alignment:
Q  14 agctagacat-agtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttctct 103  Q
    |||||||||| | ||||| ||||||||||| |||||||||||||||| ||||||| |||||||||| ||| | ||  ||| ||||||||||    
T  38326049 agctagacatgattaaaaagaataaacaacgtagtaaagaaaataaatcgatagaattccgtcgttaccgacgttcttccccaatttctct 38325959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 38326710 - 38326800
Alignment:
Q  14 agctagacat-agtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttctct 103  Q
    |||||||||| | ||||| ||||||||||| |||||||||||||||| ||||||| |||||||||| ||| | ||  ||| ||||||||||    
T  38326710 agctagacatgattaaaaagaataaacaacgtagtaaagaaaataaatcgatagaattccgtcgttaccgacgttcttccccaatttctct 38326800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 1507093 - 1507156
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaat 97  Q
    ||||||||||||||||| |||||||||||||||||||| ||||| || |||| || |||||||||    
T  1507093 aataaacaacatagtaa-gaaaataaaccgatagagtttcgtcgatgtcggcgttgctcctcaat 1507156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 25139377 - 25139423
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 79  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||    
T  25139377 aataaataacatcgtaaagaaaataaaccgatagaattccgtcgttg 25139423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 1503889 - 1503952
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaat 97  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||| || |||| || |||||||||    
T  1503889 aataaacaacatagtaa-gaaaataaatcgatagagtttcgtcgatgtcggcgttgctcctcaat 1503952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 19864914 - 19865095
Alignment:
Q  16 ctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttctcttcctcgtgctac 115  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  19864914 ctagacatagttaaaggaataaacaagatagtaaagaaaataaaccgatagagttccgtcgttgctggctttactccttaatttctcttcctcgtgctac 19865013  T
Q  116 tattgatgttgtttttctataaccatgtgcctcctagccgtctcgtgatgcgtacctctcttttctttcccaatcatgaatc 197  Q
    | |||||||||||||||||||||||||||||||| || | ||||||||||||| |||||||||| |||||||||| ||||||    
T  19865014 tgttgatgttgtttttctataaccatgtgcctcccagtcatctcgtgatgcgtgcctctcttttatttcccaatcgtgaatc 19865095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 19859948 - 19860129
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttctcttcctcgtgct 113  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  19859948 agctagacatagttaaaggactaaacaatatagtaaagaaaataaaccgatgaagttccgtcgttgccggctttactcctcaatttctcttcctcgtgct 19860047  T
Q  114 actattgatgttgtttttctataaccatgtgcctcctagccgtctcgtgatgcgtacctctcttttctttcccaatcatgaatc 197  Q
    ||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| |  ||||||| |||||||||| ||||||    
T  19860048 actgttgatgttgtttttctataaccacgtgcctcctagccatctcgtgatgcgtgc--ctcttttatttcccaatcgtgaatc 19860129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 37103641 - 37103722
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctca 95  Q
    ||||||||||  ||||| |||||||||||||| |||||||||||||||||||||||| || ||||||||||||| |||||||    
T  37103641 agctagacatgataaaaagaataaacaacataataaagaaaataaaccgatagagtttcgccgttgccggctttgctcctca 37103722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 40617139 - 40617187
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgcc 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40617139 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgcc 40617187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 5681111 - 5681058
Alignment:
Q  28 aaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgcc 81  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5681111 aaagaaataaacaatatagtaaagaaaataaaccgatagagttccgtcgttgcc 5681058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 27013940 - 27013892
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgcc 81  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27013940 aataaacaacatagtaaagaaaataaatcgatagagttccgtcgttgcc 27013892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 5672577 - 5672507
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccg-tcgttgccgg 83  Q
    ||||||||||  | |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  5672577 agctagacatgattaaagaaataaacaacatagcaaagaaaataaaccgatagagttccgttcgttgccgg 5672507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 5670258 - 5670198
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgt 74  Q
    ||||||||||  | |||| |||||||||||||| |||||||||||||||||||||||||||    
T  5670258 agctagacatgattaaagaaataaacaacatagcaaagaaaataaaccgatagagttccgt 5670198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 11703043 - 11703107
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaat 97  Q
    ||||||||||||||||||||||||||||||||||| || ||||| || |||| || |||||||||    
T  11703043 aataaacaacatagtaaagaaaataaaccgatagaatttcgtcgatgtcggcgttgctcctcaat 11703107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 12237949 - 12237900
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccg 82  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  12237949 aataaacaacataataaagaaaataaaccgataaaattccgtcgttgccg 12237900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 18859437 - 18859377
Alignment:
Q  32 gaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcc 92  Q
    |||||||||||||| |||||| ||||||  ||||||||||||||||| ||| |||| ||||    
T  18859437 gaataaacaacatactaaagacaataaattgatagagttccgtcgttaccgcctttgctcc 18859377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 10385622 - 10385575
Alignment:
Q  36 aaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccgg 83  Q
    ||||||||||||||| ||||||||   |||||||||||||||||||||    
T  10385622 aaacaacatagtaaaaaaaataaattcatagagttccgtcgttgccgg 10385575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 33400775 - 33400810
Alignment:
Q  32 gaataaacaacatagtaaagaaaataaaccgataga 67  Q
    |||||||||||||||||||||||||||| |||||||    
T  33400775 gaataaacaacatagtaaagaaaataaatcgataga 33400810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 7642771 - 7642839
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttct 101  Q
    |||||||||||||||||| |||||||| ||||| |||||| |  |||||| | || ||||| |||||||    
T  7642771 aataaacaacatagtaaaaaaaataaatcgataaagttccataattgccgacgttgctccttaatttct 7642839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 33410402 - 33410434
Alignment:
Q  46 gtaaagaaaataaaccgatagagttccgtcgtt 78  Q
    ||||| |||||||||||||||||||||||||||    
T  33410402 gtaaaaaaaataaaccgatagagttccgtcgtt 33410434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 21333107 - 21333191
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaattt 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||    
T  21333107 agctagacataataaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgctgccggc-ttgctcctcaattt 21333191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 21336123 - 21336207
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaattt 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||    
T  21336123 agctagacataataaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgctgccggc-ttgctcctcaattt 21336207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 22937382 - 22937431
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccg 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22937382 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccg 22937431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 28441574 - 28441629
Alignment:
Q  28 aaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccgg 83  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28441574 aaagaaataaacaacgtagtaaagaaaataaaccgatagagttccgtcgttgccgg 28441629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 14376247 - 14376305
Alignment:
Q  26 taaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggc 84  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||    
T  14376247 taaaaggaataaacaacatagtaaagaaaataaaccgatagaaatccgttgttgccggc 14376305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 26547770 - 26547692
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcc 92  Q
    ||||||||||  | ||| |||||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||    
T  26547770 agctagacatgatcaaacgaataaacaacataataaaaacaataaaccgatagagttccgtcgttgccggctttgctcc 26547692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 26551329 - 26551251
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcc 92  Q
    ||||||||||  | ||| |||||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||    
T  26551329 agctagacatgatcaaacgaataaacaacataataaaaacaataaaccgatagagttccgtcgttgccggctttgctcc 26551251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 34653191 - 34653281
Alignment:
Q  14 agctagacat-agtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttctct 103  Q
    |||||||||| | ||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||| | ||  ||| ||||||||||    
T  34653191 agctagacatgattaaaaagaataaacaacatagtaaagaaaataaaccgatagaattccgtcgttaccgacgttcttccccaatttctct 34653281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 43491411 - 43491357
Alignment:
Q  47 taaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttct 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  43491411 taaagaaaataaaccgatagagttccgtcgttgccggctttactccgcagtttct 43491357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 3194866 - 3194789
Alignment:
Q  26 taaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttctct 103  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||| | ||  ||| ||||||||||    
T  3194866 taaaaagaataaacaacatagtaaagaaaataaaccgatagaattccgtcgttaccgacgtttttccccaatttctct 3194789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 32837717 - 32837645
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctt 86  Q
    ||||||||||  |||||| ||||||||||||||||||||||||||||||  ||| |||||| |||||||||||    
T  32837717 agctagacatgataaaagaaataaacaacatagtaaagaaaataaaccgtcagaattccgtagttgccggctt 32837645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 40916178 - 40916241
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  40916178 aataaacaaca--gtaaagaaaataaaccaatagagttccgtcgttgtcggctttcctcctcaatt 40916241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 2452995 - 2452949
Alignment:
Q  37 aacaacatagtaaagaaaataaaccgatagagttccgtcgttgccgg 83  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||    
T  2452995 aacaacatagtaaagaaaataaatccatagagttccgtcgttgccgg 2452949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 40800244 - 40800282
Alignment:
Q  54 aataaaccgatagagttccgtcgttgccggctttactcc 92  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40800244 aataaaccgatagagttccgtcgttgccggctttactcc 40800282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 227019 - 226949
Alignment:
Q  28 aaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  227019 aaaggaataaacaacatagtaaagaaaataaaccgatagagcttcgtcgttgtcggctttactcctcaatt 226949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 221699 - 221659
Alignment:
Q  58 aaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    ||||||||||| | |||||||| ||||||||||||||||||    
T  221699 aaccgatagagcttcgtcgttgtcggctttactcctcaatt 221659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 31984661 - 31984591
Alignment:
Q  28 aaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  31984661 aaaggaataaacaacatagtaaagaaaataaaccgatagagcttcgtcgttgtcggctttactcctcaatt 31984591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 5963933 - 5963855
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcc 92  Q
    ||||||||||  | ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  5963933 agctagacatgatcaaacgaataaacaacataataaagaaaataaaccgatagagttccgtcgttgccggctttgctcc 5963855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 31981026 - 31980956
Alignment:
Q  28 aaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    ||||||||||||||||||| ||||||||| ||||||||||| | |||||||| ||||||||||||||||||    
T  31981026 aaaggaataaacaacataggaaagaaaattaaccgatagagcttcgtcgttgtcggctttactcctcaatt 31980956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 18721727 - 18721791
Alignment:
Q  34 ataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||||    
T  18721727 ataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgtcggcgttgctcctcaatt 18721791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 45155696 - 45155768
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctt 86  Q
    ||||||||||  | |||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  45155696 agctagacatgattaaagaaataaacaacatagtaaagaaaataaacatatagagttccgtcgttgccggctt 45155768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 14421411 - 14421350
Alignment:
Q  40 aacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttct 101  Q
    |||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||    
T  14421411 aacatagtaaagaaaataaaccgatagaattccgtcgttgccagttttactccgcaatttct 14421350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 18696385 - 18696450
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||  | |||| ||||||||||    
T  18696385 aataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaatt 18696450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 25595103 - 25595167
Alignment:
Q  34 ataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| |||| || ||||||||||    
T  25595103 ataaacaacatagtaaaaaaaataaaccgatagagtttcgtcgttgtcggcgttgctcctcaatt 25595167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 25591919 - 25591964
Alignment:
Q  34 ataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 79  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  25591919 ataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttg 25591964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 23613214 - 23613169
Alignment:
Q  34 ataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 79  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  23613214 ataaataacatagtaaagaaaataaaccgatagagtttcgtcgttg 23613169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 452813 - 452767
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 79  Q
    ||||||||||||| ||||||||||||| ||||||||||| |||||||    
T  452813 aataaacaacataataaagaaaataaatcgatagagttctgtcgttg 452767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 30645139 - 30645103
Alignment:
Q  28 aaaggaataaacaacatagtaaagaaaataaaccgat 64  Q
    |||||||||||||||||||||||  ||||||||||||    
T  30645139 aaaggaataaacaacatagtaaaagaaataaaccgat 30645103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 19737 - 19653
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    ||||||||||| | |||| | |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||    
T  19737 agctagacataattaaagaattaaacaacatagtaaagaaaataaaccgatagagcttcgtcgttgccggctttactcatcaatt 19653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 13287 - 13211
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttact 90  Q
    ||||||||||| | |||  |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  13287 agctagacataattaaaaaaataaacaacatagtaaagaaaataaaccgatagagcttcgtcgttgccggctttact 13211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 27303 - 27227
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttact 90  Q
    ||||||||||| | |||  |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  27303 agctagacataattaaaaaaataaacaacatagtaaagaaaataaaccgatagagcttcgtcgttgccggctttact 27227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 11825797 - 11825875
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcc 92  Q
    ||||||||||  | ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  11825797 agctagacatgatcaaacgaataaacaacataataaagaaaataaaccgatagagttccgtcgttgccggctttgctcc 11825875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 8397535 - 8397451
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaattt 99  Q
    ||||||||||  | |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  8397535 agctagacatgatcaaaggaataaacaacataataaagaaaataaaccg-tagagttccgtcgttgccggctttgctccacaattt 8397451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 8276674 - 8276602
Alignment:
Q  26 taaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaattt 99  Q
    |||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||    
T  8276674 taaaagaaataaacaacataataaagaaaataaactgatagagttccgtcgttgccggc-ttgctcctcaattt 8276602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 26557184 - 26557111
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaa-taaaccgatagagttccgtcgttgccggctt 86  Q
    ||||||||||  |||||| ||||||||||||| |||| |||| ||||| |||||||||||||||||||||||||    
T  26557184 agctagacatgataaaagaaataaacaacataataaaaaaaaataaactgatagagttccgtcgttgccggctt 26557111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 10431987 - 10431933
Alignment:
Q  28 aaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccg 82  Q
    |||| |||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  10431987 aaagaaataaacaacctagtaaagaaaataaaccattagagttccgtcgttgccg 10431933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 23467524 - 23467608
Alignment:
Q  14 agctagacatagtaaaaggaataaac-aacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    ||||||||||| | |||| ||||||| ||||||||||| ||||||||| ||||||| | ||||||||||| |||||||| ||||||    
T  23467524 agctagacataattaaagaaataaactaacatagtaaa-aaaataaactgatagagcttcgtcgttgccgactttactcatcaatt 23467608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 22256915 - 22256875
Alignment:
Q  36 aaacaacatagtaaagaaaataaaccgatagagttccgtcg 76  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  22256915 aaacaacataataaagaaaataaaccgatagagtttcgtcg 22256875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 1950880 - 1950952
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctt 86  Q
    ||||||||||| | |||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1950880 agctagacataatcaaagaattaaacaacatagtaaagaaaataaaccaatagagttccgtcgttgccggctt 1950952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 37641544 - 37641466
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcc 92  Q
    ||||||||||  | ||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  37641544 agctagacatgatcaaacgaataaacaacataataaagaaaataaaccgatagagttctgtcgttgccggctttgctcc 37641466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 49716031 - 49715985
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  49716031 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 49715985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 49719514 - 49719468
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  49719514 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 49719468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 2280077 - 2280147
Alignment:
Q  36 aaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttctcttcc 106  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||    
T  2280077 aaacaacattgtaaagaaaataaaccgatagaattccgtcgttgccggcgttgctcctcaatttcttttcc 2280147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 10107010 - 10107082
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctt 86  Q
    ||||||||||| | |||| | ||||||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  10107010 agctagacataatcaaagaattaaacaacatagtaaagaaaataaaccaataggattccgtcgttgccggctt 10107082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 10884619 - 10884568
Alignment:
Q  35 taaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctt 86  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  10884619 taaacaacatagtaaagaaaataaaccaataaagttccgtcgttgccggctt 10884568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 17532046 - 17532128
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaa 96  Q
    ||||||||||  | |||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| |||| || ||||||||    
T  17532046 agctagacatgattaaagcaataagcaacatagtaaagaaaataaagcgaaagagttccgtcgttgtcggcattgctcctcaa 17532128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 30158478 - 30158543
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 79  Q
    ||||||||||  | ||| |||||||||||||| |||||||||||||||||||||||||| ||||||    
T  30158478 agctagacatgatcaaacgaataaacaacataataaagaaaataaaccgatagagttccatcgttg 30158543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 44508477 - 44508425
Alignment:
Q  26 taaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgtt 78  Q
    ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||    
T  44508477 taaaaagaataaacaacatagtaaagaaaataaatcgatagaattccgtcgtt 44508425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 55032263 - 55032311
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccg 62  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  55032263 agctagacatgataaaaggaataaacaacatagtaaagaaaataaaccg 55032311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 36037420 - 36037489
Alignment:
Q  32 gaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatttct 101  Q
    |||||||||||||| ||||||||||||| |||||||||| || ||||| |||| || ||| |||||||||    
T  36037420 gaataaacaacataataaagaaaataaatcgatagagtttcgacgttgtcggcgttgctcatcaatttct 36037489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 17529165 - 17529244
Alignment:
Q  17 tagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaa 96  Q
    |||||||| | |||| ||||||||||||||||||| || |||||||| |||||| | |||||| |||| || ||||||||    
T  17529165 tagacataattaaagcaataaacaacatagtaaagcaagtaaaccgaaagagttacatcgttgtcggcgttgctcctcaa 17529244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 55035272 - 55035320
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccg 62  Q
    ||||||||||  ||||||||||||||| | |||||||||||||||||||    
T  55035272 agctagacatgataaaaggaataaacagcgtagtaaagaaaataaaccg 55035320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 9154476 - 9154413
Alignment:
Q  34 ataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaat 97  Q
    ||||||||||||||||| ||||||||| |||| |||||||||| || || | || |||||||||    
T  9154476 ataaacaacatagtaaaaaaaataaacagataaagttccgtcgatgtcgacgttgctcctcaat 9154413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 9392496 - 9392433
Alignment:
Q  36 aaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaattt 99  Q
    ||||||||||   ||||||||||||||||||| |||||||||||||| |  | |||||||||||    
T  9392496 aaacaacataaagaagaaaataaaccgatagaattccgtcgttgccgacggtgctcctcaattt 9392433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 16185066 - 16185105
Alignment:
Q  44 tagtaaagaaaataaaccgatagagttccgtcgttgccgg 83  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  16185066 tagtaaagaaaataaatcgatagagttctgtcgttgccgg 16185105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 25888851 - 25888915
Alignment:
Q  14 agctagacatagtaaaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccg 82  Q
    ||||||||||  | ||||||||||||||||||||||| |||||    ||||||||||| ||||||||||    
T  25888851 agctagacatgattaaaggaataaacaacatagtaaaaaaaat----cgatagagttctgtcgttgccg 25888915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 42354869 - 42354931
Alignment:
Q  36 aaacaacatagtaaagaaaa-taaaccgatagagttccgtcgttgccggctttactcctcaat 97  Q
    ||||||||||||||| |||| ||||||||||||||| ||||| || |||| || |||||||||    
T  42354869 aaacaacatagtaaaaaaaaataaaccgatagagtttcgtcgatgtcggcgttgctcctcaat 42354931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 5844 - 5893
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccg 82  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5844 aataaacaacatagtaaagaaaataaatcgatagagttccgtcgttgccg 5893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 53341 - 53406
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaatt 98  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||  | |||| ||||||||||    
T  53341 aataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaatt 53406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 68240 - 68304
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaat 97  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||  | |||| |||||||||    
T  68240 aataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaat 68304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 2138 - 2092
Alignment:
Q  36 aaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccg 82  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  2138 aaacaacataataaagaaaataaaccgatagagttccgtcgttgccg 2092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 5963 - 5922
Alignment:
Q  40 aacatagtaaagaaaataaaccgatagagttccgtcgttgccg 82  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  5963 aacatagtaaa-aaaataaaccgatagagttccgtcgttgccg 5922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 62194 - 62145
Alignment:
Q  33 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccg 82  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  62194 aataaacaacatggtaaagaaaataacccgatagagttccgtcgttgccg 62145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 26865 - 26803
Alignment:
Q  34 ataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaa 96  Q
    |||||||||||| ||||  |||||||||||||||||| |||||||| || | || ||||||||    
T  26865 ataaacaacatattaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 26803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University