View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661-Insertion-5 (Length: 300)
Name: NF4661-Insertion-5
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661-Insertion-5 |
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| [»] chr7 (5 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 6330643 - 6330350
Alignment:
| Q |
8 |
actatcacagttaacccaagttattattattaaagctctttttctatgctttttcttcaacaaagacagtccaatatgcaatacaaac-ttaagtcatat |
106 |
Q |
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| T |
6330643 |
actatcacagttaacccaaattattattattaaagctctttttctattctttttcttcaacaaagacagaccaatatgcaatacaaaccttaagtcatat |
6330544 |
T |
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| Q |
107 |
aaaaataggtttaaggtgtcacattgtaaccaactttaatttctcattttccatgtcaacatatgataaaagatgacgcgtttgtgtgtgatttaatacg |
206 |
Q |
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| T |
6330543 |
aaaaataggtttaaggtgtcacattgtaaccaactttaatttctcattttccatgtcaacatatgataaaagatgacgcgtttgtgtgtgatttaatacg |
6330444 |
T |
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| Q |
207 |
tttaaaacccttcaacaaaacaagtaaaatcgatatgcataggttgctttagaacaatttgtgtgtttgctaaataaagttctagtttttgtga |
300 |
Q |
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| T |
6330443 |
tttaaaacccttcaacaaaacaagtaaaatcgatatgcataggttgctttagaacaatttgactgtttgctaaacaaagttctagtttttgtga |
6330350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 153 - 298
Target Start/End: Complemental strand, 6345879 - 6345732
Alignment:
| Q |
153 |
ttttccatgtcaacatatgataaaagat-gacgcgtttgtgtgtgatttaatacgtttaaaacccttcaacaaaacaagtaaaatcga-tatgcataggt |
250 |
Q |
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| T |
6345879 |
ttttccatgtcagcatatgataaaagacagacgcgtttgtgtgtggtttaatacgtttgaaacccttcaataaaccaagtaaaattgggtatgggtagct |
6345780 |
T |
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| Q |
251 |
tgctttagaacaatttgtgtgtttgctaaataaagttctagtttttgt |
298 |
Q |
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| T |
6345779 |
tgctttagaacaatttgtttgtttgctaaatcaagttctagtttttgt |
6345732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 156
Target Start/End: Complemental strand, 6347091 - 6346975
Alignment:
| Q |
39 |
aaagctctttttctatgctttttcttcaacaaagacagtccaatatgcaatacaaac-ttaagtcatataaaaataggtttaaggtgtcacattgtaacc |
137 |
Q |
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| T |
6347091 |
aaagctctttttctatgctttttcttcaacaaagacagtccaatgt--aatacaaaccttaagtcttgtataaataggtttaagctgtcacattgtaacc |
6346994 |
T |
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| Q |
138 |
aactttaatttctcatttt |
156 |
Q |
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| T |
6346993 |
aactttaatttctcatttt |
6346975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 6329092 - 6329046
Alignment:
| Q |
250 |
ttgctttagaacaatttgtgtgtttgctaaataaagttctagttttt |
296 |
Q |
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| T |
6329092 |
ttgctttagaacaatttgtgtgtttgctaaatgaagttctagttttt |
6329046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 6329131 - 6329095
Alignment:
| Q |
160 |
tgtcaacatatgataaaagatgacgcgtttgtgtgtg |
196 |
Q |
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| T |
6329131 |
tgtcaacatatgattaaagacgacgcgtttgtgtgtg |
6329095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 152 - 300
Target Start/End: Original strand, 470 - 622
Alignment:
| Q |
152 |
attttccatgtcaacatat--gataaaagatgacgcgtttgtgt--gtgatttaatacgtttaaaacccttcaacaaaacaagtaaaatcgatatgcata |
247 |
Q |
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| T |
470 |
attttccatgtcaacatatatgataaaagacaacgagtttgtgtctgtggtttaatacctttgaaacccatcaataaaacaagtaaaatcgatacgtgga |
569 |
T |
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| Q |
248 |
ggttgctttagaacaatttgtgtgtttgctaaataaagttctagtttttgtga |
300 |
Q |
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| T |
570 |
gcttgctttagaacaatttgtgtgtttgctaaataaagttctagtttttgtga |
622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 2427247 - 2427281
Alignment:
| Q |
109 |
aaataggtttaaggtgtcacattgtaaccaacttt |
143 |
Q |
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| T |
2427247 |
aaataggcttaaggtgtcacattgtaaccaacttt |
2427281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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