View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661-Insertion-6 (Length: 284)
Name: NF4661-Insertion-6
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661-Insertion-6 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 41042827 - 41043104
Alignment:
| Q |
7 |
aacacatacatataacatattaaatagaattcagattcaaagagtagcttctgcaaggaaaaccagatacctgcatcttgcgctaaaacggagattttcc |
106 |
Q |
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| T |
41042827 |
aacacatacatataacatattaaatagaattcagattcaaagagtagcttctgcaaggaaaaccagatacctgcatcttgcgctaaaacggagattttcc |
41042926 |
T |
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| Q |
107 |
tctactgtcaagtttccatgtacaatatcatcctgtggcacaaaaccagtaattttcttataagagtgaatggattcattttttccattaactagaattg |
206 |
Q |
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| T |
41042927 |
tctactgtcaagtttccatgtacaatatcatcctgtggcacaaaaccagtaattttcttataagagtgaatggattcattttttccattaactagaattg |
41043026 |
T |
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| Q |
207 |
agcctgacatagtgcatcctcttgcttttccagccaaagctgaaagaaatgtggtttttccagctcctgagggtccca |
284 |
Q |
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| T |
41043027 |
agcctgacatagtgcatcctcttgcttttccagccaaagctgaaagaaatgtggtttttccagctcctgagggtccca |
41043104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 74 - 284
Target Start/End: Complemental strand, 28087532 - 28087322
Alignment:
| Q |
74 |
tacctgcatcttgcgctaaaacggagattttcctctactgtcaagtttccatgtacaatatcatcctgtggcacaaaaccagtaattttcttataagagt |
173 |
Q |
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| T |
28087532 |
tacctgcatcttgcactgaaacgaagattttcctccaccgtcaagttcccatgcacaatatcatcttgtggcacatatccaacaattttctgataacagt |
28087433 |
T |
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| Q |
174 |
gaatggattcattttttccattaactagaattgagcctgacatagtgcatcctcttgcttttccagccaaagctgaaagaaatgtggtttttccagctcc |
273 |
Q |
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| T |
28087432 |
gaatggattcaggtcttccattgacaaaaattgagcctgtcatagtgcatcctcttattttccctgccagggcagaaagaaatgtagttttgccagctcc |
28087333 |
T |
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| Q |
274 |
tgagggtccca |
284 |
Q |
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| T |
28087332 |
cgagggaccca |
28087322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 276
Target Start/End: Complemental strand, 42553932 - 42553769
Alignment:
| Q |
113 |
gtcaagtttccatgtacaatatcatcctgtggcacaaaaccagtaattttcttataagagtgaatggattcattttttccattaactagaattgagcctg |
212 |
Q |
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| T |
42553932 |
gtcaagtttccatgaactacatcatcttgtggcacgaagccaataattttcttaaaggaatgaattgattcattccttccatttatcagaattgaaccag |
42553833 |
T |
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| Q |
213 |
acatagtgcatcctcttgcttttccagccaaagctgaaagaaatgtggtttttccagctcctga |
276 |
Q |
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| T |
42553832 |
taaccaagcatccaagtgcttttccagctagagctgaaagaaatgttgtcttgccagcccctga |
42553769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 21492550 - 21492473
Alignment:
| Q |
73 |
atacctgcatcttgcgctaaaacggagattttcctctactgtcaagtttccatgtacaatatcatcctgtggcacaaa |
150 |
Q |
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| T |
21492550 |
atacctgcatctggcactaaaccatagattctcctccactgtcaaattgccatggacaatatcatcttgtggaacaaa |
21492473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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