View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661-Insertion-7 (Length: 105)
Name: NF4661-Insertion-7
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661-Insertion-7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 5e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 5e-47
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 11980824 - 11980726
Alignment:
| Q |
7 |
accggcctccggtgaaattttaagagcgactttctatcaacctccttcaatgtgaaagtcattttcagcacctcccatatgcacacaaatgtagcatca |
105 |
Q |
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| T |
11980824 |
accggcctccggtgaaattttaagagcgactttctatcaacctccttcaatgtgaaagtcattttcagcgcctcccatatgcacacaaatgtagcatca |
11980726 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 11954651 - 11954601
Alignment:
| Q |
39 |
tctatcaacctccttcaatgtgaaagtcattttcagcacctcccatatgca |
89 |
Q |
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| T |
11954651 |
tctatcaacctccttcagcaagaaagtcattttctgcacctcccatatgca |
11954601 |
T |
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