View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4661-Insertion-8 (Length: 203)

Name: NF4661-Insertion-8
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4661-Insertion-8
NF4661-Insertion-8
[»] chr4 (6 HSPs)
chr4 (31-175)||(51682769-51682913)
chr4 (31-150)||(30164082-30164187)
chr4 (18-51)||(12068213-12068246)
chr4 (18-51)||(30057940-30057973)
chr4 (8-40)||(13393257-13393289)
chr4 (8-40)||(13396396-13396428)
[»] chr6 (5 HSPs)
chr6 (8-172)||(1100019-1100180)
chr6 (8-158)||(18101319-18101465)
chr6 (17-86)||(1100816-1100885)
chr6 (24-116)||(9956885-9956976)
chr6 (15-51)||(18100556-18100592)
[»] chr8 (4 HSPs)
chr8 (17-158)||(31146355-31146493)
chr8 (14-152)||(12295362-12295496)
chr8 (8-49)||(35020879-35020920)
chr8 (8-40)||(35751651-35751683)
[»] chr3 (2 HSPs)
chr3 (32-156)||(55201072-55201193)
chr3 (48-156)||(24163115-24163220)
[»] chr1 (1 HSPs)
chr1 (8-158)||(24316688-24316834)
[»] chr7 (3 HSPs)
chr7 (16-63)||(30677112-30677159)
chr7 (8-42)||(23956586-23956620)
chr7 (8-53)||(31238919-31238964)
[»] chr2 (2 HSPs)
chr2 (8-51)||(37911550-37911593)
chr2 (8-49)||(29721106-29721147)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 51682913 - 51682769
Alignment:
Q  31 atgagaatgaatctcaaccatcaagatcaaaatcaaaggtttagattaaaaaacttattttacataacacatgtgcctttccacatgctatcctcaatca 130  Q
    |||||||||||||||||||||||||| |||||| || |||| |||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||    
T  51682913 atgagaatgaatctcaaccatcaagaacaaaataaatggttaagattaaaaaacatattttagataacacatgtgtctttccacatgctatcctcaatca 51682814  T
Q  131 tccattcaacttctcatcttctctaaccatccgtcctttgttctt 175  Q
    |||||||||||||| ||||| | | ||| ||||| ||||||||||    
T  51682813 tccattcaacttctaatcttgtttgaccttccgttctttgttctt 51682769  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 31 - 150
Target Start/End: Complemental strand, 30164187 - 30164082
Alignment:
Q  31 atgagaatgaatctcaaccatcaagatcaaaatcaaaggtttagattaaaaaacttattttacataacacatgtgcctttccacatgctatcctcaatca 130  Q
    |||||||||||||||| |||||||||||||||| || |||||||||||||||||           ||||||| |||||||||||||||||||||||   |    
T  30164187 atgagaatgaatctcagccatcaagatcaaaataaatggtttagattaaaaaac-----------aacacatatgcctttccacatgctatcctca---a 30164102  T
Q  131 tccattcaacttctcatctt 150  Q
    ||||||||||||||||||||    
T  30164101 tccattcaacttctcatctt 30164082  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 12068213 - 12068246
Alignment:
Q  18 ttatatgagaatgatgagaatgaatctcaaccat 51  Q
    ||||||||||||||| ||||||||||||||||||    
T  12068213 ttatatgagaatgataagaatgaatctcaaccat 12068246  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 30057940 - 30057973
Alignment:
Q  18 ttatatgagaatgatgagaatgaatctcaaccat 51  Q
    ||||||||||||||||||||| ||||||||||||    
T  30057940 ttatatgagaatgatgagaataaatctcaaccat 30057973  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 13393289 - 13393257
Alignment:
Q  8 aatgacttttttatatgagaatgatgagaatga 40  Q
    |||||| ||||||||||||||||||||||||||    
T  13393289 aatgacatttttatatgagaatgatgagaatga 13393257  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 13396428 - 13396396
Alignment:
Q  8 aatgacttttttatatgagaatgatgagaatga 40  Q
    |||||| ||||||||||||||||||||||||||    
T  13396428 aatgacatttttatatgagaatgatgagaatga 13396396  T

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Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 1100019 - 1100180
Alignment:
Q  8 aatgacttttttatatgagaatgatgagaatgaatctcaaccatcaagatcaaaatcaaaggtttagattaaaaaacttattttacataacacatgtgcc 107  Q
    |||||| | |||||||||||||||||||||| ||| |||| |||||| |||||||| || ||| ||||||||||||||||||||| ||||||||| ||||    
T  1100019 aatgacatgtttatatgagaatgatgagaataaatttcaatcatcaaaatcaaaataaatggtctagattaaaaaacttattttagataacacatatgcc 1100118  T
Q  108 tttccacatgctatcctcaatcatccattcaacttctcatcttctctaaccatccgtcctttgtt 172  Q
    |||||||||||||||||||   ||||||||| ||||||||||||||| ||| ||| || ||||||    
T  1100119 tttccacatgctatcctca---atccattcaccttctcatcttctcttaccttccatcatttgtt 1100180  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 18101465 - 18101319
Alignment:
Q  8 aatgacttttttatatgagaatgatgagaatgaatctcaaccatcaagatcaaaatcaaaggtttagattaaaaaacttattttacataacacatgtgcc 107  Q
    |||||| | |||||||||||||||| ||||||||||||| |||||| ||||||||| || ||| |||||||||| |||||||||| ||||||    ||||    
T  18101465 aatgacatctttatatgagaatgataagaatgaatctcagccatca-gatcaaaataaatggtctagattaaaatacttattttaaataacaagcatgcc 18101367  T
Q  108 tttccacatgctatcctcaatcatccattcaacttctcatcttctctaacc 158  Q
    ||||||||||||||| |||| |    ||||||||||| |||||||| ||||    
T  18101366 tttccacatgctatcatcaacct---attcaacttctgatcttctccaacc 18101319  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 1100885 - 1100816
Alignment:
Q  17 tttatatgagaatgatgagaatgaatctcaaccatcaagatcaaaatcaaaggtttagattaaaaaactt 86  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||| || ||| |||||||||||||||    
T  1100885 tttatatgagaatgatgaaaatgaatctccgccatcaagatcaaaataaatggtctagattaaaaaactt 1100816  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 9956976 - 9956885
Alignment:
Q  24 gagaatgatgagaatgaatctcaaccatcaagatcaaaatcaaaggtttagattaaaaaacttattttacataacacatgtgcctttccacat 116  Q
    |||||||||||||||   |||||||||| | |||||||||  | |||||||||||||||  |||||||| ||  ||||||| ||| |||||||    
T  9956976 gagaatgatgagaatacttctcaaccatta-gatcaaaatagatggtttagattaaaaactttattttagatggcacatgtccctctccacat 9956885  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 18100556 - 18100592
Alignment:
Q  15 tttttatatgagaatgatgagaatgaatctcaaccat 51  Q
    |||||||||||||||||||||||| |||| |||||||    
T  18100556 tttttatatgagaatgatgagaataaatcacaaccat 18100592  T

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Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 31146355 - 31146493
Alignment:
Q  17 tttatatgagaatgatgagaatgaatctcaaccatcaagatcaaaatcaaaggtttagattaaaaaacttattttacataacacatgtgcctttccacat 116  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| |  |||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  31146355 tttatacgagaatgataagaatgaatctcaaccatcaagatcaaaataattggtttagattaaaaaacttaatttatataacacatgtgccttttcacat 31146454  T
Q  117 gctatcctcaatcatccattcaacttctcatcttctctaacc 158  Q
    ||||||||||   | ||||||| |||||||||||||| ||||    
T  31146455 gctatcctca---acccattcaccttctcatcttctccaacc 31146493  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 12295362 - 12295496
Alignment:
Q  14 ttttttatatgagaatgatgagaatgaatctcaaccatcaagatcaaaatcaaaggtttagattaaaaaacttattttacataacacatgtgcctttcca 113  Q
    |||||||| |||||||| |   |||||||||||  ||||||||||||||| || ||| ||||||||||||||||||||| ||||||||| | ||||||||    
T  12295362 ttttttatgtgagaatggtttaaatgaatctcagtcatcaagatcaaaataaatggtctagattaaaaaacttattttagataacacatattcctttcca 12295461  T
Q  114 catgctatcctcaatcatccattcaacttctcatcttct 152  Q
    |||| |||||||||    || ||||||||||||||||||    
T  12295462 catgttatcctcaa----cccttcaacttctcatcttct 12295496  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 35020920 - 35020879
Alignment:
Q  8 aatgacttttttatatgagaatgatgagaatgaatctcaacc 49  Q
    ||||||| |||||| ||||||||| |||||||||||||||||    
T  35020920 aatgactattttatgtgagaatgacgagaatgaatctcaacc 35020879  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 35751683 - 35751651
Alignment:
Q  8 aatgacttttttatatgagaatgatgagaatga 40  Q
    ||||||| |||||||||||||||||||||||||    
T  35751683 aatgactattttatatgagaatgatgagaatga 35751651  T

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Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 55201072 - 55201193
Alignment:
Q  32 tgagaatgaatctcaaccatcaagatcaaaatcaaaggtttagattaaaaaacttattttacataacacatgtgcctttccacatgctatcctcaatcat 131  Q
    ||||||||||||| | |||||||||||||||| || ||| |||||||||||||||||||||  ||||| || || ||||||||||||||||||||   ||    
T  55201072 tgagaatgaatcttagccatcaagatcaaaataaatggtctagattaaaaaacttattttagttaacagatatgtctttccacatgctatcctca---at 55201168  T
Q  132 ccattcaacttctcatcttctctaa 156  Q
    |||||||||||||||||||||||||    
T  55201169 ccattcaacttctcatcttctctaa 55201193  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 24163220 - 24163115
Alignment:
Q  48 ccatcaagatcaaaatcaaaggtttagattaaaaaacttattttacataacacatgtgcctttccacatgctatcctcaatcatccattcaacttctcat 147  Q
    |||||||||||||||| || ||| |||||||||||||||||||||  |||||||| || ||||||||||||||||||||   ||||||||||||||||||    
T  24163220 ccatcaagatcaaaataaatggtctagattaaaaaacttattttagttaacacatatgtctttccacatgctatcctca---atccattcaacttctcat 24163124  T
Q  148 cttctctaa 156  Q
    |||||||||    
T  24163123 cttctctaa 24163115  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 24316834 - 24316688
Alignment:
Q  8 aatgacttttttatatgagaatgatgagaatgaatctcaaccatcaagatcaaaatcaaaggtttagattaaaaaacttattttacataacacatgtgcc 107  Q
    |||||| | |||||||||||||| | ||||||||||||| |||||| ||||||||| || ||| |||||||||| |||||||||| ||||||  | |||     
T  24316834 aatgacatctttatatgagaatggtaagaatgaatctcagccatca-gatcaaaataaatggtctagattaaaatacttattttaaataacaagtatgca 24316736  T
Q  108 tttccacatgctatcctcaatcatccattcaacttctcatcttctctaacc 158  Q
    ||||||||||||||| |||   |  |||||||||||| |||||||| ||||    
T  24316735 tttccacatgctatcatca---actcattcaacttctgatcttctccaacc 24316688  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 30677159 - 30677112
Alignment:
Q  16 ttttatatgagaatgatgagaatgaatctcaaccatcaagatcaaaat 63  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  30677159 ttttatatgagaatgataagaatgaatctcaaccatcaagattaaaat 30677112  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 23956620 - 23956586
Alignment:
Q  8 aatgacttttttatatgagaatgatgagaatgaat 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  23956620 aatgactttgttatatgagaatgatgagaatgaat 23956586  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 31238964 - 31238919
Alignment:
Q  8 aatgacttttttatatgagaatgatgagaatgaatctcaaccatca 53  Q
    |||||| || |||||||||||||||||||||||||  |||||||||    
T  31238964 aatgacattcttatatgagaatgatgagaatgaattacaaccatca 31238919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 37911550 - 37911593
Alignment:
Q  8 aatgacttttttatatgagaatgatgagaatgaatctcaaccat 51  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||    
T  37911550 aatgaatttcttatatgagaatgataagaatgaatctcaaccat 37911593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 29721147 - 29721106
Alignment:
Q  8 aatgacttttttatatgagaatgatgagaatgaatctcaacc 49  Q
    ||||||| |||||| ||||||||| |||||||||||||||||    
T  29721147 aatgactattttatgtgagaatgacgagaatgaatctcaacc 29721106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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