View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4661-Insertion-9 (Length: 172)

Name: NF4661-Insertion-9
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4661-Insertion-9
NF4661-Insertion-9
[»] chr2 (9 HSPs)
chr2 (9-172)||(30182495-30182658)
chr2 (9-107)||(30069696-30069795)
chr2 (112-171)||(30253716-30253775)
chr2 (112-171)||(30176589-30176648)
chr2 (20-104)||(30024612-30024697)
chr2 (20-104)||(30036000-30036085)
chr2 (20-104)||(30117425-30117510)
chr2 (20-104)||(30132182-30132267)
chr2 (20-104)||(30230138-30230223)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 5e-64; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 30182658 - 30182495
Alignment:
Q  9 gatatgtgtcatgctgcttgctattttcttcttgaaaaagtaaacaaaatgcgagtttagtttcattccatgtttttattaagtttatatgtttatgtcc 108  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  30182658 gatatgtgtcatgctgcttgctcttttcttcttgaaaaagtaaacaaaattcaagtttagtttcattccatgtttttattaagtttatatgtttatgtcc 30182559  T
Q  109 cgatattcttttctttacatagctgttagcttgaatttgaatacttgagtttcataggttgtcc 172  Q
    ||||| | |||||||||| ||| |||| ||||||||||||||||||| ||||||||| ||||||    
T  30182558 cgatacttttttctttacctagttgttcgcttgaatttgaatacttgtgtttcatagattgtcc 30182495  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 30069696 - 30069795
Alignment:
Q  9 gatatgtgtcatgctgcttgctattttcttcttgaaaaagtaaacaaaatgcgagt-ttagtttcattccatgtttttattaagtttatatgtttatgtc 107  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||||||| |||| || ||||||||||||| ||| ||||||||||| || |||||||    
T  30069696 gatatgtgtcatgctgtttgttattttctccttgaaaaagtaaacaaaatgtgagtgttggtttcattccatggtttgattaagtttatctgattatgtc 30069795  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 30253716 - 30253775
Alignment:
Q  112 tattcttttctttacatagctgttagcttgaatttgaatacttgagtttcataggttgtc 171  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||    
T  30253716 tattcttttctttacatagctattagcttgaatctgattacttgtgtttcataggttgtc 30253775  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 30176589 - 30176648
Alignment:
Q  112 tattcttttctttacatagctgttagcttgaatttgaatacttgagtttcataggttgtc 171  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||| ||| | |||||||||    
T  30176589 tattcttttctttacatagctattagcttgaatctgattacttgtgttacctaggttgtc 30176648  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 30024612 - 30024697
Alignment:
Q  20 tgctgcttgctattttcttcttgaaaaagtaaacaaaatgcgagt-ttagtttcattccatgtttttattaagtttatatgtttat 104  Q
    |||| |||| ||||||||  |||||||||  | ||||||| |||| ||||||| |||||||||||| || ||||||||||| ||||    
T  30024612 tgctacttgttattttctcattgaaaaagggagcaaaatgagagtgttagttttattccatgttttcataaagtttatatgcttat 30024697  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 30036085 - 30036000
Alignment:
Q  20 tgctgcttgctattttcttcttgaaaaagtaaacaaaatgcgagt-ttagtttcattccatgtttttattaagtttatatgtttat 104  Q
    |||| |||| ||||||||  |||||||||  | ||||||| |||| ||||||| |||||||||||| || ||||||||||| ||||    
T  30036085 tgctacttgttattttctcattgaaaaagggagcaaaatgagagtgttagttttattccatgttttcataaagtttatatgcttat 30036000  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 30117510 - 30117425
Alignment:
Q  20 tgctgcttgctattttcttcttgaaaaagtaaacaaaatgcgagt-ttagtttcattccatgtttttattaagtttatatgtttat 104  Q
    |||| |||| ||||||||  |||||||||  | ||||||| |||| ||||||| |||||||||||| || ||||||||||| ||||    
T  30117510 tgctacttgttattttctcattgaaaaagggagcaaaatgagagtgttagttttattccatgttttcataaagtttatatgcttat 30117425  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 30132267 - 30132182
Alignment:
Q  20 tgctgcttgctattttcttcttgaaaaagtaaacaaaatgcgagt-ttagtttcattccatgtttttattaagtttatatgtttat 104  Q
    |||| |||| ||||||||  |||||||||  | ||||||| |||| ||||||| |||||||||||| || ||||||||||| ||||    
T  30132267 tgctacttgttattttctcattgaaaaagggagcaaaatgagagtgttagttttattccatgttttcataaagtttatatgcttat 30132182  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 30230223 - 30230138
Alignment:
Q  20 tgctgcttgctattttcttcttgaaaaagtaaacaaaatgcgagt-ttagtttcattccatgtttttattaagtttatatgtttat 104  Q
    |||| |||| ||||||||  |||||||||  | ||||||| |||| ||||||| |||||||||||| || ||||||||||| ||||    
T  30230223 tgctacttgttattttctcattgaaaaagggagcaaaatgagagtgttagttttattccatgttttcataaagtttatatgcttat 30230138  T

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