View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661_high_19 (Length: 282)
Name: NF4661_high_19
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 49993980 - 49994233
Alignment:
| Q |
19 |
ctgaactggcataggaacaccgtacatggcaccggtgaggaagttatagaagccggtgaaaatcaaagtggtgccaaggttgaggtttttggaaagggtg |
118 |
Q |
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| T |
49993980 |
ctgaactggcataggaacaccgtacatggcaccggtgaggaagttatagaagccggtgaaaatcaaagtggtgccaaggttgaggtttttggaaagggtg |
49994079 |
T |
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| Q |
119 |
agcgaaagtactattggtatgtatgtgccaaggtcacccatggctccattgagttcagacaatgttgaatggaaatttaagttgnnnnnnnnnnnnngta |
218 |
Q |
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| T |
49994080 |
agtgaaagtactattggtatgtatgtgccaaggtcacccatggctccattgagttcagataatgttgaatggaaatttaagttgttttttactttttgta |
49994179 |
T |
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| Q |
219 |
tggtggtgagtcttgtgggagtggtggtgggaagagtttgggggtttgatgatg |
272 |
Q |
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| T |
49994180 |
tggtggtgagtcttgtgggagtggtggtgggaagagtttgggggtttgatgatg |
49994233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 25800028 - 25800093
Alignment:
| Q |
128 |
actattggtatgtatgtgccaaggtcacccatggctccattgagttcagacaatgttgaatggaaa |
193 |
Q |
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| T |
25800028 |
actatgggtatgtaggtgccaaggtcacccatggcaccatttaattcagcccattttgaatggaaa |
25800093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 1874666 - 1874599
Alignment:
| Q |
122 |
gaaagtactattggtatgtatgtgccaaggtcacccatggctccattgagttcagacaatgttgaatg |
189 |
Q |
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| T |
1874666 |
gaaagaactattggtatgtaggtgccaaggtcacccatggcaccatttagttcagcccattttgaatg |
1874599 |
T |
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