View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661_high_26 (Length: 247)
Name: NF4661_high_26
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 1623112 - 1622974
Alignment:
| Q |
1 |
tttacatctggtctttgatcatttatgttgtgctatagctatttctttactacctccgttattgtacttaattctttgtaattaagttcattgtaattat |
100 |
Q |
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| T |
1623112 |
tttacatctggtctttgatcatttatgttgtgctatagctatttctttactacctccgttattgtacttaattctttgtaattaagttcattgtaattat |
1623013 |
T |
|
| Q |
101 |
tgtaagagcatgctcatattcttttgtacactttgagag |
139 |
Q |
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| T |
1623012 |
tgtaagagcatgctcatattcttttgtacactttgagag |
1622974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 1605990 - 1605859
Alignment:
| Q |
1 |
tttacatctggtctttgatcatttatgttgtgctatagctatttctttactacctccgttattgtacttaattctttgtaattaagttcattgtaattat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1605990 |
tttacatctggtctttgatcatttatgttgtgctatagctatttcttcattgcctcagttattgtacttaattctttgtaattaagttcattgtaattct |
1605891 |
T |
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| Q |
101 |
tgtaagagcatgctcatattcttttgtacact |
132 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1605890 |
tgtaagagcatgctcatattcttttgtacact |
1605859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 1622912 - 1622866
Alignment:
| Q |
201 |
cgttgtacaatcatacattgagtttgagaggagctattaagaataat |
247 |
Q |
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| T |
1622912 |
cgttgtacaatcatacattgagtttgagaggagctattaagaataat |
1622866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 18780806 - 18780677
Alignment:
| Q |
1 |
tttacatctggtctttgatcatttatgttgtgctatagctatttctttactacctccgttattgtacttaattctttgtaattaagttcattgtaattat |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| | | | || ||||||||||||||||||||||||||| |||||||||||| | |
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| T |
18780806 |
tttacatctggtctttgatcttttatgttgtgctatagctatttcttcattgcttcaattattgtacttaattctttgtaattaaattcattgtaattct |
18780707 |
T |
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| Q |
101 |
tgtaagagcatgctcatattcttttgtaca |
130 |
Q |
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||||||||||| | |||||||||||||||| |
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| T |
18780706 |
tgtaagagcatacccatattcttttgtaca |
18780677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 18780607 - 18780565
Alignment:
| Q |
201 |
cgttgtacaatcatacattgagtttgagaggagctattaagaa |
243 |
Q |
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|||||||||||||||| ||||||||||| | |||||||||||| |
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| T |
18780607 |
cgttgtacaatcataccttgagtttgagggaagctattaagaa |
18780565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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