View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661_high_3 (Length: 460)
Name: NF4661_high_3
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 209 - 450
Target Start/End: Complemental strand, 4809475 - 4809223
Alignment:
| Q |
209 |
tcaccccgaaggatgtcccttttagaaagtttggttaggtttgtggggt--------------aggcatgtgacatcagccctgacgtaatctaatcaat |
294 |
Q |
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| T |
4809475 |
tcaccccgaaggatgtcccttttagaaagtttggttaggtttgtggggtgtaagttaatccttaggcatatgacatcagccctgacgtaatctaatcaat |
4809376 |
T |
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| Q |
295 |
aattgcacaaccccccacccactcattgatcctcctaacaatccagtataaaacatgagtagtactccctatgttttgtacaccaagactgaaaatcagt |
394 |
Q |
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| T |
4809375 |
aattgcac---ccccccttcactcattgatccccctaacaatccagtataaaacatgagtagtactccctatgttttgtacaccaagactgaaaatcagt |
4809279 |
T |
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| Q |
395 |
aactaagaatggcttctttttccctatcatttctagtgttgttccttgcatctctg |
450 |
Q |
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| T |
4809278 |
aactaagaatggcttctttttccctatcatttctagtgttgttccttgcatctctg |
4809223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4809684 - 4809630
Alignment:
| Q |
1 |
tcaaagcctacactataagacccactcttaaagttaagacaaaaacaagaactac |
55 |
Q |
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| T |
4809684 |
tcaaagcctacactataagacccactcttaaagttaagacaaaaacaagaactac |
4809630 |
T |
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