View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661_high_31 (Length: 235)
Name: NF4661_high_31
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 47039811 - 47039585
Alignment:
| Q |
14 |
cacagactccagattaaagcgaatgaacaataaaagcttaatagaagctacatgtatatat----------------------tcaactaagtgcagtac |
91 |
Q |
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| T |
47039811 |
cacagattacagattaaagcgaatgaacaataaaagcttaatagaagctacatgtatatattcataatgttttccattcatattcaactaagtgcagtac |
47039712 |
T |
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| Q |
92 |
aaaaccattcacttcatcagagtgctacatttcatttctgctagaacagaacacagaaaccctagaattcttgagaagcagatccaatttctccttttcc |
191 |
Q |
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| T |
47039711 |
aaaaccattcacttcatcagagtgctacatttcatttctgctagaacagaacccagaaaccctagaattcttgagacgcagatccaatttctccttttcc |
47039612 |
T |
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| Q |
192 |
ctttccaaccttcttagggagcaaagt |
218 |
Q |
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| T |
47039611 |
ctttccaaccttcttagggagcaaagt |
47039585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 47033373 - 47033301
Alignment:
| Q |
146 |
agaaaccctagaattcttgagaagcagatccaatttctccttttccctttccaaccttcttagggagcaaagt |
218 |
Q |
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| T |
47033373 |
agaaaccctaaaattcttgagaagcagatccaatttctcctttgccctttccaaccttcttaggaagcaaagt |
47033301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 44071725 - 44071804
Alignment:
| Q |
136 |
aacagaacacagaaaccctagaattcttgagaagcagatccaatttctccttttccctttccaaccttcttagggagcaa |
215 |
Q |
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| T |
44071725 |
aacagcacacagaaaccctaaaactcttgagaagcagatccaatttcccctttcccttttccaactttcttaggaagcaa |
44071804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 47035261 - 47035343
Alignment:
| Q |
136 |
aacagaacacagaaaccctagaattcttgagaagcagatccaatttctccttttccctttccaaccttcttagggagcaaagt |
218 |
Q |
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|||||| |||| |||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||| || |||||||| |
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| T |
47035261 |
aacagatcacataaaccctaaaattcttgagaagcagatccaatttcggcttttcccttcccagacttctttggcagcaaagt |
47035343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 5338617 - 5338665
Alignment:
| Q |
159 |
ttcttgagaagcagatccaatttctccttttccctttccaaccttctta |
207 |
Q |
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| T |
5338617 |
ttcttgagaagcatatccaatttcgctttttccttttccaacgttctta |
5338665 |
T |
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