View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4661_high_35 (Length: 217)

Name: NF4661_high_35
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4661_high_35
NF4661_high_35
[»] chr6 (34 HSPs)
chr6 (11-199)||(30132365-30132554)
chr6 (63-193)||(24884846-24884978)
chr6 (11-195)||(29950056-29950243)
chr6 (11-132)||(30149180-30149302)
chr6 (27-187)||(24941869-24942032)
chr6 (11-187)||(24934320-24934499)
chr6 (40-187)||(29953861-29954011)
chr6 (41-187)||(30053110-30053259)
chr6 (11-135)||(21160846-21160971)
chr6 (41-137)||(30154183-30154280)
chr6 (11-185)||(24739364-24739541)
chr6 (63-122)||(30134858-30134917)
chr6 (37-139)||(30577985-30578088)
chr6 (64-195)||(29882142-29882275)
chr6 (64-195)||(29909298-29909431)
chr6 (64-192)||(28926709-28926839)
chr6 (64-195)||(29099050-29099183)
chr6 (64-195)||(29115968-29116101)
chr6 (58-106)||(30028839-30028887)
chr6 (64-195)||(29073470-29073603)
chr6 (64-195)||(29106043-29106176)
chr6 (64-195)||(29348757-29348890)
chr6 (71-132)||(31000162-31000223)
chr6 (66-126)||(29887006-29887066)
chr6 (64-124)||(29894260-29894320)
chr6 (64-124)||(29897784-29897844)
chr6 (65-124)||(29084726-29084785)
chr6 (70-132)||(24730568-24730630)
chr6 (64-150)||(24886725-24886813)
chr6 (72-124)||(29358211-29358263)
chr6 (64-124)||(29834922-29834982)
chr6 (64-124)||(29866356-29866416)
chr6 (68-124)||(29889231-29889287)
chr6 (64-124)||(29905346-29905406)
[»] scaffold0110 (1 HSPs)
scaffold0110 (11-187)||(44036-44215)
[»] chr3 (2 HSPs)
chr3 (19-187)||(24226481-24226652)
chr3 (69-115)||(9628562-9628608)
[»] chr4 (1 HSPs)
chr4 (27-187)||(44262760-44262923)
[»] scaffold0573 (1 HSPs)
scaffold0573 (64-192)||(3844-3974)
[»] chr5 (1 HSPs)
chr5 (64-137)||(20888445-20888515)
[»] scaffold0054 (1 HSPs)
scaffold0054 (64-195)||(53755-53888)
[»] chr1 (1 HSPs)
chr1 (60-195)||(19489953-19490090)
[»] scaffold0237 (1 HSPs)
scaffold0237 (64-195)||(22050-22183)
[»] chr2 (2 HSPs)
chr2 (70-132)||(15063100-15063162)
chr2 (70-126)||(32760457-32760513)
[»] chr7 (1 HSPs)
chr7 (64-100)||(38144976-38145012)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 30132365 - 30132554
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaacaagagttgaacctaatgttgttactta-tagttctttaatggatggttatttctt 109  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  30132365 gagagatgaaaaaagttagcaatgcgttggctgtaatgataaaacaagagttgaacttaatgttgttacttaatagttctttaatggatggttatttctt 30132464  T
Q  110 ggttaaagaagtgaacatggccacatatattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctacactatcatggttg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30132465 ggttaaagaagtgaacatggccacatatattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctacactaacatggttg 30132554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 193
Target Start/End: Original strand, 24884846 - 24884978
Alignment:
Q  63 gaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggccacata--tattcaaaactatgcctcaaaggg 160  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||| |||||  ||| ||| |    
T  24884846 gaacctaatgttgttacttatacttctttaatggatggttatttcttggttaaagaagtgaacaaggccacatatgtattcaacactattgctcgaagtg 24884945  T
Q  161 gaatgattcctgatgttcagagctacactatca 193  Q
    || |||||||| ||||||| ||||||| |||||    
T  24884946 gagtgattccttatgttcaaagctacaatatca 24884978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 29950243 - 29950056
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaacaa-gagttgaacctaatgttgttacttatagttctttaatggatggttatttctt 109  Q
    ||||| ||||||||| |||| ||| ||||||||| |||||||||||| | || |||||| || |||||||||||||||||||||||||||||||||||||    
T  29950243 gagaggtgaaaaaagctagacatgtgttggctgttatgataaaacaacgtgtggaacctgatattgttacttatagttctttaatggatggttatttctt 29950144  T
Q  110 ggttaaagaagtgaacatggcc--acatatattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctacactatcatg 195  Q
    |||||||||||| |||| ||||  |||| ||||||| ||  | |||| ||||||| ||| |||| |||||   ||||||| |||||||    
T  29950143 ggttaaagaagtcaacaaggccaaacatctattcaacacccttcctctaaggggagtgactcctaatgtttttagctacaatatcatg 29950056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 30149180 - 30149302
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaacaa-gagttgaacctaatgttgttacttatagttctttaatggatggttatttctt 109  Q
    ||||| ||||||||| |||| ||| ||||||||| |||||||||||| | || |||||| || |||||||||||||||||||||||||||||||||||||    
T  30149180 gagaggtgaaaaaagctagatatgtgttggctgttatgataaaacaacgtgtggaacctgatattgttacttatagttctttaatggatggttatttctt 30149279  T
Q  110 ggttaaagaagtgaacatggcca 132  Q
    |||||||||||| |||| |||||    
T  30149280 ggttaaagaagtcaacaaggcca 30149302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 187
Target Start/End: Original strand, 24941869 - 24942032
Alignment:
Q  27 tagaaatgcgttggctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaac 125  Q
    |||||||| ||| ||||| |||||||||||||  || |||||||||||||||||||||| |||||| |||||||| | ||||||||||||||||||||||    
T  24941869 tagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttacttatacttctttgatggatgggtgtttcttggttaaagaagtgaac 24941968  T
Q  126 atggccacata--tattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    | |||||||||  ||||||| |||||| ||||||| ||| ||  |||| || |||| |||||||    
T  24941969 agggccacatatgtattcaacactatggctcaaagaggagtggctcctaatcttcatagctaca 24942032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 24934320 - 24934499
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttctt 109  Q
    ||||||||||||||| |||||||| ||| ||||| |||||||||||||  || ||  ||||| |||||||||||| ||||||||||||||| ||||||||    
T  24934320 gagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggattctaatattgttacttataattctttaatggatgggtatttctt 24934419  T
Q  110 ggttaaagaagtgaacatggccaca--tatattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    ||| ||| ||| ||| | |||||||  | | ||||| |||||| ||  ||||||| ||| |||||||||||| |||||||    
T  24934420 ggtcaaacaagagaataaggccacatttgtgttcaacactatggctagaaggggagtgactcctgatgttcaaagctaca 24934499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 29954011 - 29953861
Alignment:
Q  40 gctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggccacat--a 136  Q
    ||||| |||||||||||||  || |||||||||||||||||||||| |||||| |||||||| |||||| | ||||||||||| |||| ||||||||  |    
T  29954011 gctgttatgataaaacaaggtgtggaacctaatgttgttacttatacttctttgatggatgggtatttcctagttaaagaagtcaacaaggccacatata 29953912  T
Q  137 tattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    ||||||| |||||  ||||||||||| ||| ||||||  |||| |||||||    
T  29953911 tattcaacactattgctcaaaggggagtgactcctgaacttcatagctaca 29953861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 30053110 - 30053259
Alignment:
Q  41 ctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcc--acatat 137  Q
    |||| |||||||||||||  || |||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||| |||| ||||  |||| |    
T  30053110 ctgttatgataaaacaaggcgtggaacctaatgttgttacttatacttctttgatggatgggtatttcttggtaaaagaagtcaacaaggccaaacatgt 30053209  T
Q  138 attcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    |||||| |||||  ||| ||||||| ||| |||| ||||||| |||||||    
T  30053210 attcaacactatttctctaaggggagtgactcctaatgttcatagctaca 30053259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 21160971 - 21160846
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttctt 109  Q
    ||||||||||||||| |||||| | ||| ||| | |||||||||||||  || |||| |||||||||||||||||||| ||| |||||||| ||||||||    
T  21160971 gagagatgaaaaaagctagaaaagtgttagcttttatgataaaacaaggcgtggaacttaatgttgttacttatagttttttgatggatgggtatttctt 21160872  T
Q  110 ggttaaagaagtgaacatggccacat 135  Q
    ||| ||||||||||| | ||||||||    
T  21160871 ggtcaaagaagtgaataaggccacat 21160846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 30154183 - 30154280
Alignment:
Q  41 ctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggccacatat 137  Q
    |||| |||||||||||| | || |||||| ||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| | ||||||||||    
T  30154183 ctgttatgataaaacaacatgtggaacctgatgttgttacttataattctttgatggatgggtatttcttggttaaagaagtgaataaggccacatat 30154280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 24739541 - 24739364
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaac-aagagttgaacctaatgttgttacttatagttctttaatggatggttatttctt 109  Q
    ||||||||||||||| |||||||| ||| ||||| |||||||||| ||| || || ||| ||||  ||||||||| |||||| |||||||| ||||||||    
T  24739541 gagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaagtgtggatcctgatgtcattacttataattctttgatggatgggtatttctt 24739442  T
Q  110 ggttaaagaagtgaacatggccaca--tatattcaaaactatgcctcaaaggggaatgattcctgatgttcagagcta 185  Q
    ||| ||| ||| ||| | |||||||  | | ||||| |||||| ||  ||||||| ||| |||||||||||| |||||    
T  24739441 ggtcaaacaagagaataaggccacatttgtgttcaacactatggctagaaggggagtgactcctgatgttcatagcta 24739364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 30134858 - 30134917
Alignment:
Q  63 gaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtg 122  Q
    ||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||    
T  30134858 gaacctaatgttgttacttatagttttttaatggatagatatttcttggttaaagaagtg 30134917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 30578088 - 30577985
Alignment:
Q  37 ttggctgtaatgataaaacaa-gagttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggccacat 135  Q
    |||||||| |||||||||||| | ||  ||||| |||||||||||| |||||||||||| ||||| ||||||||||||||| ||| ||||| ||| | ||    
T  30578088 ttggctgttatgataaaacaaagtgtgaaacctgatgttgttacttgtagttctttaatagatgggtatttcttggttaaaaaagcgaacaaggctagat 30577989  T
Q  136 atat 139  Q
    ||||    
T  30577988 atat 30577985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 29882142 - 29882275
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcc-aca-tatattcaaaactatgcctcaaagggg 161  Q
    ||||| ||||||||||||| || |||||||||||||| ||||   |||| || |||||||||| |||| | | ||||||||| |||||| |||| |||||    
T  29882142 aacctgatgttgttacttacagctctttaatggatggatattgtctggtaaatgaagtgaacaaggccgagagtatattcaacactatgtctcatagggg 29882241  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| | || ||||||||||||||| |||||||    
T  29882242 agtgactgctaatgttcagagctacagtatcatg 29882275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 29909298 - 29909431
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcc-aca-tatattcaaaactatgcctcaaagggg 161  Q
    ||||| ||||||||||||| || |||||||||||||| ||||   |||| || |||||||||| |||| | | ||||||||| |||||| |||| |||||    
T  29909298 aacctgatgttgttacttacagctctttaatggatggatattgtctggtaaatgaagtgaacaaggccgagagtatattcaacactatgtctcatagggg 29909397  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| | || ||||||||||||||| |||||||    
T  29909398 agtgactgctaatgttcagagctacagtatcatg 29909431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 28926839 - 28926709
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    ||||||| |||||||||||||| |||||||||||||| |||| | | |||||||||||||||| ||| |    ||||||||| | |||| ||||  ||||    
T  28926839 aacctaacgttgttacttatagctctttaatggatggatattgccttgttaaagaagtgaacaaggctaagagtatattcaacaatatggctcagggggg 28926740  T
Q  162 aatgattcctgatgttcagagctacactatc 192  Q
    | ||| ||||||| ||||||| |||| ||||    
T  28926739 agtgaatcctgatattcagagttacaatatc 28926709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 29099050 - 29099183
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    |||||||| ||||||||||||  |||||||||||||| |||| | | |||||||||||||| | ||| |    ||||||||| |||||| ||||  ||||    
T  29099050 aacctaattttgttacttataactctttaatggatggatattgcctagttaaagaagtgaataaggctaagagtatattcaacactatggctcagggggg 29099149  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| ||||||| ||||||| |||| |||||||    
T  29099150 agtgaatcctgatattcagagttacagtatcatg 29099183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 29115968 - 29116101
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    |||||||| ||||||||||||  |||||||||||||| |||| | | |||||||||||||| | ||| |    ||||||||| |||||| ||||  ||||    
T  29115968 aacctaattttgttacttataactctttaatggatggatattgcctagttaaagaagtgaataaggctaagagtatattcaacactatggctcagggggg 29116067  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| ||||||| ||||||| |||| |||||||    
T  29116068 agtgaatcctgatattcagagttacagtatcatg 29116101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 30028839 - 30028887
Alignment:
Q  58 gagttgaacctaatgttgttacttatagttctttaatggatggttattt 106  Q
    ||||| ||| ||||||||||||||||||||||||||||||||| |||||    
T  30028839 gagttaaacttaatgttgttacttatagttctttaatggatgggtattt 30028887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 29073470 - 29073603
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    |||||||||||||||||||| | |||||||||||||| |||| | | |||||| ||||||| | ||| |    ||||||||| |||||| ||||  ||||    
T  29073470 aacctaatgttgttacttattgctctttaatggatggatattgcctagttaaacaagtgaataaggctaatagtatattcaacactatggctcagggggg 29073569  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| |||||||  |||||| |||| |||||||    
T  29073570 agtgaatcctgatactcagagttacaatatcatg 29073603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 29106043 - 29106176
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    |||||||||||||||||||| | |||||||||||||| |||| | | |||||| ||||||| | ||| |    ||||||||| |||||| ||||  ||||    
T  29106043 aacctaatgttgttacttattgctctttaatggatggatattgcctagttaaacaagtgaataaggctaatagtatattcaacactatggctcagggggg 29106142  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| |||||||  |||||| |||| |||||||    
T  29106143 agtgaatcctgatactcagagttacaatatcatg 29106176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 29348890 - 29348757
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    ||||| |||||||||||||| | |||||||||||||| |||| | | |||||| ||||||| | ||| |    ||||||||| |||||| ||||  ||||    
T  29348890 aacctgatgttgttacttattgctctttaatggatggatattgcctagttaaacaagtgaataaggctaagagtatattcaacactatggctcagggggg 29348791  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| | || ||||||||||||||| |||||||    
T  29348790 agtgactgctaatgttcagagctacaatatcatg 29348757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 31000223 - 31000162
Alignment:
Q  71 tgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca 132  Q
    ||||||||||||||| |||||||||||||| ||||  ||| |||| |||||||||| |||||    
T  31000223 tgttgttacttatagctctttaatggatggatattgtttgattaacgaagtgaacaaggcca 31000162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 29887006 - 29887066
Alignment:
Q  66 cctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaaca 126  Q
    ||||||| |||||||||||| |||||||||||||| |||| | | ||||| ||||||||||    
T  29887006 cctaatgctgttacttatagctctttaatggatggatattgcctagttaatgaagtgaaca 29887066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 29894260 - 29894320
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||||||||||||||| ||| | |||||||||||||| |||| | | ||||||||||||||    
T  29894260 aacctaatgttgttacctattgctctttaatggatggatattgcctagttaaagaagtgaa 29894320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 29897784 - 29897844
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    ||||||||||| |||||||||  |||||||||||||| |||| | | ||||||||||||||    
T  29897784 aacctaatgtttttacttataactctttaatggatggatattgcctagttaaagaagtgaa 29897844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 29084726 - 29084785
Alignment:
Q  65 acctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||| |||||||||||||||  |||||||||||||| |||| | | ||||||||||||||    
T  29084726 acctgatgttgttacttataactctttaatggatggatattgcctagttaaagaagtgaa 29084785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 24730568 - 24730630
Alignment:
Q  70 atgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca 132  Q
    |||||||||||||||  |||||||||||||| |||| ||| ||||||||| | |||| |||||    
T  24730568 atgttgttacttataactctttaatggatggatattgcttagttaaagaaattaacaaggcca 24730630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 24886813 - 24886725
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatg 150  Q
    |||||| |||||| |||||||   |||||||| |||| |||| ||| ||||||||| ||||||||||||   |||||||||| ||||||    
T  24886813 aacctagtgttgtcacttataacactttaatgaatggatattgcttagttaaagaaatgaacatggccaaggatatattcaacactatg 24886725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 29358263 - 29358211
Alignment:
Q  72 gttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||||||||||||  |||||||||||||| |||||| | |||||| |||||||    
T  29358263 gttgttacttataactctttaatggatggatatttcctagttaaacaagtgaa 29358211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 29834922 - 29834982
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||| |||||||||||||||||  ||||||||||||| |||| | | |||||| |||||||    
T  29834922 aacccaatgttgttacttatagcgctttaatggatggatattgcctagttaaaaaagtgaa 29834982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 29866356 - 29866416
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||| |||||||||||||||||  ||||||||||||| |||| | | |||||| |||||||    
T  29866356 aacccaatgttgttacttatagcgctttaatggatggatattgcctagttaaaaaagtgaa 29866416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 29889231 - 29889287
Alignment:
Q  68 taatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||||||||||||||||  |||||||||||||| |||| | | |||||| |||||||    
T  29889231 taatgttgttacttataactctttaatggatggatattgcctagttaaacaagtgaa 29889287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 29905346 - 29905406
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||||||  ||||||||||||  |||||||||||||| |||| |||  |||||||||||||    
T  29905346 aacctaactttgttacttataactctttaatggatggatattgcttacttaaagaagtgaa 29905406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 44215 - 44036
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttctt 109  Q
    ||||| ||||||||| |||||||| ||||||||| |||||||||||||  || ||||| ||| ||| |||||||||||||||||||||||| | |||||     
T  44215 gagaggtgaaaaaagctagaaatgtgttggctgttatgataaaacaaggcgtggaacccaatattgctacttatagttctttaatggatgggtgtttctc 44116  T
Q  110 ggttaaagaagtgaacatggccacata--tattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    ||||||||||||||||| |||||||||  ||||||| |||||  ||  ||||||| ||  || |||||||||||||||||    
T  44115 ggttaaagaagtgaacaaggccacatatgtattcaacactattgctagaaggggagtggctcttgatgttcagagctaca 44036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 24226481 - 24226652
Alignment:
Q  19 aaaaaagttagaaatgcgttggctgtaatgataaaacaa-gagttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaag 117  Q
    ||||||| |||||||| ||||||| | |||||||||||| | || ||||||||| |||||||||||| |||||| |||||||| ||||||||||||||||    
T  24226481 aaaaaagctagaaatgtgttggctattatgataaaacaacgtgtggaacctaatattgttacttataattctttgatggatgggtatttcttggttaaag 24226580  T
Q  118 aagtgaacatggcc--acatatattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    |||| |||| ||||  |||  ||||||| |||||  ||| ||||||||||| |||| ||||||  |||||||    
T  24226581 aagtcaacaaggccaaacagttattcaacactatttctctaaggggaatgactcctaatgttcgtagctaca 24226652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 9628608 - 9628562
Alignment:
Q  69 aatgttgttacttatagttctttaatggatggttatttcttggttaa 115  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||    
T  9628608 aatgttgttacttatggtgctttaatggatggttatttcttagttaa 9628562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 187
Target Start/End: Complemental strand, 44262923 - 44262760
Alignment:
Q  27 tagaaatgcgttggctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaac 125  Q
    |||||||| ||| ||||| |||||||||||||  || || ||| || || ||||||||| |||||| |||||||| ||||||||||||||||||||||||    
T  44262923 tagaaatgtgttagctgttatgataaaacaaggtgtggatcctgatatttttacttatatttctttgatggatgggtatttcttggttaaagaagtgaac 44262824  T
Q  126 atggccacata--tattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    | |||||||||  ||||||| |||||  ||| ||| ||| ||||||||  |||||| |||||||    
T  44262823 aaggccacatatgtattcaacactattgctcgaagtggagtgattcctagtgttcaaagctaca 44262760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 3844 - 3974
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    ||||||| |||||||||||||| |||||||||||||| |||| | | |||||||||||||||| ||| |    ||||||||| | |||| ||||  ||||    
T  3844 aacctaacgttgttacttatagctctttaatggatggatattgccttgttaaagaagtgaacaaggctaagagtatattcaacaatatggctcagggggg 3943  T
Q  162 aatgattcctgatgttcagagctacactatc 192  Q
    | ||| ||||||| ||||||| |||| ||||    
T  3944 agtgaatcctgatattcagagttacaatatc 3974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 20888445 - 20888515
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggccacatat 137  Q
    |||||||||||||||||||||||||||||||   ||| ||||||||||||||||| |||| ||  |||||||||    
T  20888445 aacctaatgttgttacttatagttctttaat---tgggtatttcttggttaaagatgtgaccaaagccacatat 20888515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 53888 - 53755
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    |||||||||||||||||||| | |||||||||||||| |||| | | |||||| ||||||| | ||| |   | |||||||| |||||| |||| |||||    
T  53888 aacctaatgttgttacttattgctctttaatggatggatattgcctagttaaacaagtgaataaggctaagaagatattcaacactatgtctcagagggg 53789  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| | || ||||||| ||||||| |||||||    
T  53788 agtgactgctaatgttcatagctacaatatcatg 53755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 19489953 - 19490090
Alignment:
Q  60 gttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggccaca--tatattcaaaactatgcctcaaa 157  Q
    |||||||| ||  ||||||||||||||  ||| |||||||| |||| | | ||||| |||||||||| ||| | |  |||||||||  |||||   ||||    
T  19489953 gttgaaccgaacattgttacttatagtgttttgatggatgggtattgcctagttaatgaagtgaacaaggcgaaagatatattcaattctatgatgcaaa 19490052  T
Q  158 ggggaatgattcctgatgttcagagctacactatcatg 195  Q
    ||||||||| ||||||| |||||||||| |||||||||    
T  19490053 ggggaatgactcctgatattcagagctatactatcatg 19490090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 22050 - 22183
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcc-aca-tatattcaaaactatgcctcaaagggg 161  Q
    ||||| ||||||||||||| || |||||||||||||| ||||   |||| || |||||||||| |||| | | ||||||||| |||||| |||| |||||    
T  22050 aacctgatgttgttacttacagctctttaatggatggatattgtctggtaaatgaagtgaacaaggccgagagtatattcaacactatgtctcatagggg 22149  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
      ||| | || ||||||||||||||| |||||||    
T  22150 tgtgactgctaatgttcagagctacaatatcatg 22183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 15063162 - 15063100
Alignment:
Q  70 atgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca 132  Q
    |||||||||||||||  |||||||||||||| |||| ||| |||||| ||||||||| |||||    
T  15063162 atgttgttacttataactctttaatggatggatattgcttagttaaacaagtgaacaaggcca 15063100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 32760513 - 32760457
Alignment:
Q  70 atgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaaca 126  Q
    ||||||| | ||||| |||||| | |||||| |||||||||||||| ||||||||||    
T  32760513 atgttgtcatttataattctttgacggatgggtatttcttggttaaggaagtgaaca 32760457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 38145012 - 38144976
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatgg 100  Q
    |||||||||||||||| |||||| |||||||||||||    
T  38145012 aacctaatgttgttacatatagtgctttaatggatgg 38144976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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