View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661_high_6 (Length: 439)
Name: NF4661_high_6
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 34422416 - 34422001
Alignment:
| Q |
15 |
atcatattgcatgagttttcagtttgtactttccttttttgcttacttacggtttaaaaagattgtgtaaattaattaacaagaatatgtttggttattt |
114 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34422416 |
atcatattgcatgagtt---agtttgtactttccttttttgcttacttacggtttaaaaagattgtgtaaattaattaacaagaatatgtttggttattt |
34422320 |
T |
|
| Q |
115 |
tgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgaggtaaaagatagtcctcaacttcaagcc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34422319 |
tgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgaggtaaaagatagtcctcaacttcaagcc |
34422220 |
T |
|
| Q |
215 |
catgctgaaaaggtgtttcaaatggtgagtgcaaccaacatcaactaa-nnnnnnnattcttcattcagcgtctatggttctcttt-aattaataactat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34422219 |
catgctgaaaaggtgtttcaaatggtgagtgcaaccaacatcaactaattttttttattcttcattcagcgtctatggttctctttaaattaataactat |
34422120 |
T |
|
| Q |
313 |
aaaatcttttcaaatacatgtattttgtatattcttaattttannnnnnnncccttgataaatatgatccaaaaatgttggggtagtttatacatggttt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34422119 |
aaaatcttttcaaatacatgtattttgtatattcttaatttaatttattttcccttgataaatatgatccaaaaatgttggggtagtttatacatggttt |
34422020 |
T |
|
| Q |
413 |
tgctttcaattgggtctct |
431 |
Q |
| |
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||||||||||||||||||| |
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| T |
34422019 |
tgctttcaattgggtctct |
34422001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 81 - 240
Target Start/End: Complemental strand, 34430625 - 34430466
Alignment:
| Q |
81 |
gtaaattaattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacac |
180 |
Q |
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|||||||||||| |||||||||| |||||| ||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | || |
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| T |
34430625 |
gtaaattaattagcaagaatatgcttggttgttttgataaaaatagtatattagagaaagcacctgcagcaaaaggcatgttctcttttcttaaagatac |
34430526 |
T |
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| Q |
181 |
gcctgaggtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggt |
240 |
Q |
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||| ||| |||||||||||||||||||||| ||||||| ||| || ||| ||||||| |
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| T |
34430525 |
aactggagtacaagatagtcctcaacttcaagctcatgctgcaaaagtttttgaaatggt |
34430466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 79 - 245
Target Start/End: Original strand, 34685780 - 34685946
Alignment:
| Q |
79 |
gtgtaaattaattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaac |
178 |
Q |
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|
||||||||||| |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
34685780 |
gtgtaaattaaataacaagaatatgtttggttgctttaattaaaatagtatattagagaaagcacctgcagcaaagggtatgttctcttttcttaaggac |
34685879 |
T |
|
| Q |
179 |
acgcctgaggtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggtgagtg |
245 |
Q |
| |
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| | | ||| |||||||||| ||||| ||||| || |||||||| || ||| ||||||||||| |
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|
| T |
34685880 |
tcaacgggagtacaagatagtccccaactccaagctcacgctgaaaaagtttttggaatggtgagtg |
34685946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 245
Target Start/End: Original strand, 34678640 - 34678797
Alignment:
| Q |
88 |
aattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgag |
187 |
Q |
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||||||||| ||||| ||||||| ||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| || | ||| |
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| T |
34678640 |
aattaacaataatatttttggttgctttatttaaaacagtatattggagaaagcacctgcagcaaagggtatgttctcttttcttaaggactcagctgga |
34678739 |
T |
|
| Q |
188 |
gtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggtgagtg |
245 |
Q |
| |
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||| ||||||||||| ||||||||| |||||||| ||| || ||| ||||||||||| |
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| T |
34678740 |
gtacaagatagtcctaaacttcaagtccatgctggaaaagtttttggaatggtgagtg |
34678797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 112 - 244
Target Start/End: Original strand, 18270770 - 18270902
Alignment:
| Q |
112 |
ttttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgaggtaaaagatagtcctcaacttcaa |
211 |
Q |
| |
|
|||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| | | ||| ||| ||||||||||| |||| ||| |
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| T |
18270770 |
tttttattaaaatagtatattagacaaagcacctgcagcaaagggcatgttctcttttcttaaggattcagctggagtacaagatagtcctaaactccaa |
18270869 |
T |
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| Q |
212 |
gcccatgctgaaaaggtgtttcaaatggtgagt |
244 |
Q |
| |
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||||| |||||||| || ||| |||||||||| |
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| T |
18270870 |
gcccacgctgaaaaagtttttggaatggtgagt |
18270902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 27842566 - 27842420
Alignment:
| Q |
80 |
tgtaaattaattaacaagaatatgtttggttat-tttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaac |
178 |
Q |
| |
|
||||||||||||| ||| ||||||||| || | ||| |||||| ||| |||||||||||||||||||| ||||| ||| ||||||||||||||||| || |
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| T |
27842566 |
tgtaaattaattagcaaaaatatgttttattttattttattaaaatagcatattagagaaagcacctgcggcaaaaggcttgttctcttttcttaaggac |
27842467 |
T |
|
| Q |
179 |
acgcctgaggtaaaagatagtcctcaacttcaagcccatgctgaaaa |
225 |
Q |
| |
|
| ||| ||| |||||||||||||||| ||||| || |||||||| |
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| T |
27842466 |
tcagctggagtacaagatagtcctcaactccaagctcacgctgaaaa |
27842420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 241
Target Start/End: Original strand, 34649171 - 34649324
Alignment:
| Q |
88 |
aattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgag |
187 |
Q |
| |
|
||||||||| ||| | ||||| | |||||||||| ||||||||| ||||||||||||||| |||||| ||| |||||||||| ||| | || ||| |
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| T |
34649171 |
aattaacaataatgtttttggctgctttgattaaaatagtatatttgagaaagcacctgcaacaaaggatatgctctcttttctgaagggctcgactgga |
34649270 |
T |
|
| Q |
188 |
gtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggtg |
241 |
Q |
| |
|
||| |||||||||| |||| ||||| ||||||||| | || ||| |||||||| |
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|
| T |
34649271 |
gtacaagatagtcccgaactccaagctcatgctgaacaagtttttgaaatggtg |
34649324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 104 - 245
Target Start/End: Complemental strand, 2068268 - 2068127
Alignment:
| Q |
104 |
tttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgaggtaaaagatagtcctc |
203 |
Q |
| |
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|||||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||| |
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| T |
2068268 |
tttggttattttgattgaaatagtatattggagaaagcccctgcagcaaagggcatgttctcttttcttaaggacacagctggagtacaagatagtccta |
2068169 |
T |
|
| Q |
204 |
aacttcaagcccatgctgaaaaggtgtttcaaatggtgagtg |
245 |
Q |
| |
|
|||| ||| ||||||||||| || ||| ||||||||||| |
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|
| T |
2068168 |
aactccaaagtcatgctgaaaaagtttttggaatggtgagtg |
2068127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 40847578 - 40847524
Alignment:
| Q |
117 |
attaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttct |
171 |
Q |
| |
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|||||| ||||||||| || ||||||||||||||||| |||||||| |||||||| |
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|
| T |
40847578 |
attaaaatagtatattggataaagcacctgcagcaaaaggcatgttttcttttct |
40847524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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