View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661_low_1 (Length: 516)
Name: NF4661_low_1
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 169 - 371
Target Start/End: Complemental strand, 3521544 - 3521342
Alignment:
| Q |
169 |
ggtggtcatagatagatagtcaacataagtcaaaaccctcgaaatcaacaaacaagaacgaacaccgtcaattgaattctgaaattgaacatgggtggca |
268 |
Q |
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| T |
3521544 |
ggtggtcatagatagatagtcaacataagtcaaaaccctcgaaatcaacaaacaagaacgaacaccgtcaattgaattctgaaattgaacatgggtggca |
3521445 |
T |
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| Q |
269 |
taggtatattaccctcaaaaccagaaaaatattattatcaaccttacaataatattaataacaacaacattcatcgcattagatcatcaaaattcacact |
368 |
Q |
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| T |
3521444 |
taggtatattaccctcaaaaccagaaaaatatcattatcaaccttacaataatattaataacaacaacattcttcgcattagatcatcaaaattcacact |
3521345 |
T |
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| Q |
369 |
atg |
371 |
Q |
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||| |
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| T |
3521344 |
atg |
3521342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 429 - 516
Target Start/End: Complemental strand, 3521284 - 3521197
Alignment:
| Q |
429 |
cacgtcatcacttcccaccaaaaattcatggggcggacccgaatgggaaaaacgggtcaccaaatcaacccgccataactctccctcc |
516 |
Q |
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| T |
3521284 |
cacgtcatcacttcccaccaaaaattcatggggcggacccgaatgggaaaaacgggtcaccaaatcaacccgccataactctccctcc |
3521197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 3521648 - 3521574
Alignment:
| Q |
95 |
caggccgccgtactgtcgcaactatttaaaacccttgcatgtaaatgcaaacaatccttcctttttcgtggaatg |
169 |
Q |
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| T |
3521648 |
caggccgccgtactgtcgcaactatttaaaacccttgcatgtaaacacaaacaatccttccttgttcttggaatg |
3521574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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