View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4661_low_10 (Length: 379)

Name: NF4661_low_10
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4661_low_10
NF4661_low_10
[»] chr2 (16 HSPs)
chr2 (16-374)||(30182654-30183022)
chr2 (100-374)||(30024262-30024536)
chr2 (100-374)||(30036161-30036435)
chr2 (100-374)||(30117586-30117860)
chr2 (100-374)||(30230299-30230573)
chr2 (100-374)||(30132343-30132617)
chr2 (100-374)||(30069337-30069611)
chr2 (109-374)||(30791399-30791664)
chr2 (109-373)||(30253238-30253502)
chr2 (100-206)||(30237592-30237698)
chr2 (109-374)||(30280707-30280972)
chr2 (177-374)||(30173156-30173353)
chr2 (109-373)||(30160751-30161015)
chr2 (288-344)||(30031253-30031309)
chr2 (288-344)||(30225391-30225447)
chr2 (296-362)||(30104616-30104682)


Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 30182654 - 30183022
Alignment:
Q  16 atatctatttaatatgacatttttgctgtgtatactagaagcaactaaatatgtgcatgaatcattttgccatttgttggtagagta----------gaa 105  Q
    |||||||||  | |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||          |||    
T  30182654 atatctattataaatgacatttttggtgtgtatactaaaagcaactaaatatgtgcatgaagcattttgccatttgttagtagagtattgagatgtagaa 30182753  T
Q  106 tgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcacaatgaa 205  Q
    |||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30182754 tgcacctgttcaattgagagaagggattttgtatcaactgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcacaatgaa 30182853  T
Q  206 gcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgttaattc 305  Q
    |||||||||||| |  |||||||||| |||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30182854 gcacatccacatgtcttaaagcaggacaatccagggtaagtaatccacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgttaattc 30182953  T
Q  306 tgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 374  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30182954 tgggaaattaagtattggaactgtgtcagacatttcatcttgttctacaataatctcaacgccacattc 30183022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 100 - 374
Target Start/End: Complemental strand, 30024536 - 30024262
Alignment:
Q  100 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcac 199  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  30024536 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgtcac 30024437  T
Q  200 aatgaagcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgt 299  Q
    |||||||||||||||||| |  |||| ||||| |||||| ||||| |||| || |  ||||||||  |||||||  ||||||||||||||||||| ||||    
T  30024436 aatgaagcacatccacatgtcttaaaacaggacaatccaaggtatgtaatccatgagagaagcttctaagttgtgacaaatctcgaaaactcaaagatgt 30024337  T
Q  300 taattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 374  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||| ||| || |||||| ||| | |||||||||    
T  30024336 taattctgggaaaataagtatcggatatgtgtcagccaattcatcatgtgctgcaataaactctatgccacattc 30024262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 100 - 374
Target Start/End: Original strand, 30036161 - 30036435
Alignment:
Q  100 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcac 199  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  30036161 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgtcac 30036260  T
Q  200 aatgaagcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgt 299  Q
    |||||||||||||||||| |  |||| ||||| |||||| ||||| |||| || |  ||||||||  |||||||  ||||||||||||||||||| ||||    
T  30036261 aatgaagcacatccacatgtcttaaaacaggacaatccaaggtatgtaatccatgagagaagcttctaagttgtgacaaatctcgaaaactcaaagatgt 30036360  T
Q  300 taattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 374  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||| ||| || |||||| ||| | |||||||||    
T  30036361 taattctgggaaaataagtatcggatatgtgtcagccaattcatcatgtgctgcaataaactctatgccacattc 30036435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 100 - 374
Target Start/End: Original strand, 30117586 - 30117860
Alignment:
Q  100 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcac 199  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  30117586 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgtcac 30117685  T
Q  200 aatgaagcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgt 299  Q
    |||||||||||||||||| |  |||| ||||| |||||| ||||| |||| || |  ||||||||  |||||||  ||||||||||||||||||| ||||    
T  30117686 aatgaagcacatccacatgtcttaaaacaggacaatccaaggtatgtaatccatgagagaagcttctaagttgtgacaaatctcgaaaactcaaagatgt 30117785  T
Q  300 taattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 374  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||| ||| || |||||| ||| | |||||||||    
T  30117786 taattctgggaaaataagtatcggatatgtgtcagccaattcatcatgtgctgcaataaactctatgccacattc 30117860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 100 - 374
Target Start/End: Original strand, 30230299 - 30230573
Alignment:
Q  100 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcac 199  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  30230299 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgtcac 30230398  T
Q  200 aatgaagcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgt 299  Q
    |||||||||||||||||| |  |||| ||||| |||||| ||||| |||| || |  ||||||||  |||||||  ||||||||||||||||||| ||||    
T  30230399 aatgaagcacatccacatgtcttaaaacaggacaatccaaggtatgtaatccatgagagaagcttctaagttgtgacaaatctcgaaaactcaaagatgt 30230498  T
Q  300 taattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 374  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||| ||| || |||||| ||| | |||||||||    
T  30230499 taattctgggaaaataagtatcggatatgtgtcagccaattcatcatgtgctgcaataaactctatgccacattc 30230573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 100 - 374
Target Start/End: Original strand, 30132343 - 30132617
Alignment:
Q  100 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcac 199  Q
    ||||||||||||| ||| ||||| ||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  30132343 gtagaatgcaccttttcgattganagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgtcac 30132442  T
Q  200 aatgaagcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgt 299  Q
    |||||||||||||||||| |  |||| ||||| |||||| ||| | |||| || |  ||||||||  |||||||  ||||||||||||||||||| ||||    
T  30132443 aatgaagcacatccacatgtcttaaaacaggacaatccaaggtntgtaatccatgagagaagcttctaagttgtgacaaatctcgaaaactcaaagatgt 30132542  T
Q  300 taattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 374  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||| ||| || |||||| ||| | |||||||||    
T  30132543 taattctgggaaaataagtatcggatatgtgtcagccaattcatcatgtgctgcaataaactctatgccacattc 30132617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 100 - 374
Target Start/End: Complemental strand, 30069611 - 30069337
Alignment:
Q  100 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcac 199  Q
    ||||||||||||| ||||||||| || |||| || ||||||| | |||||||| ||| || ||||||||||| |||| ||||||||  ||||||||||||    
T  30069611 gtagaatgcaccttttcaattgaaaggaggggtagtgtatcaaccgggacaatatctcggcaatttatagacattggcttgaatagttcgagcttgtcac 30069512  T
Q  200 aatgaagcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgt 299  Q
    ||||||||||||||||||||  |||| ||||| |||||| ||||| |||| ||  |||||||||| |||||||| |||||||| | ||||||||| ||||    
T  30069511 aatgaagcacatccacatctcttaaaacaggacaatccaaggtatgtaatccattgtagaagcttcgaagttgtgtcaaatcttggaaactcaaagatgt 30069412  T
Q  300 taattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 374  Q
    ||||||||||||||||| |||||||| | |||   ||| |||||||||| ||||||||||||| | |||||||||    
T  30069411 taattctgggaaaataaatattggaaatctgttgaccaattcatcttgtgctacaataatctccatgccacattc 30069337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 109 - 374
Target Start/End: Complemental strand, 30791664 - 30791399
Alignment:
Q  109 acctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcacaatgaagca 208  Q
    |||| |||||||||||||||||  | ||||||| |||||||| | ||| |||||| || || |||||| ||||||||  | |||||||||||||||||||    
T  30791664 accttttcaattgagagaaggggaagtgtatcaactgggacactgtctcggtaatatagagtctttggcttgaatagttcaagcttgtcacaatgaagca 30791565  T
Q  209 catccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgttaattctgg 308  Q
    |||||| ||||  |||| | ||| |||||| |||||  ||| ||  |||||||||| |||||| | |||||||| | ||||||||| | |||||||||||    
T  30791564 catccagatctcttaaaactggacaatccaaggtatgaaatccatagtagaagcttcgaagttctgtcaaatcttggaaactcaaagaagttaattctgg 30791465  T
Q  309 gaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 374  Q
    ||||||||||||||||||| ||||| |||||||||| ||| |||||||||| || |||||||||||    
T  30791464 gaaaataagtattggaactctgtcaaccatttcatcatgtgctacaataatttctacgccacattc 30791399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 109 - 373
Target Start/End: Complemental strand, 30253502 - 30253238
Alignment:
Q  109 acctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcacaatgaagca 208  Q
    |||| ||||||||||||||||| || ||||||| || | ||| | |||||| |||| | |||| || || |||||||  | |||||||||||||||||||    
T  30253502 accttttcaattgagagaaggggtagtgtatcaactagtacattgtcttggcaattaagagaccttagtgtgaatagttcaagcttgtcacaatgaagca 30253403  T
Q  209 catccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgttaattctgg 308  Q
    |||||||||||| |||   | || |||| | ||||| |||| || ||||||| ||| |||||||| ||||||| |||||||||||| |||||||||||||    
T  30253402 catccacatcttttaagaaaagacaatctaaggtatgtaatccaaggtagaatcttcgaagttgtgtcaaatcacgaaaactcaaagatgttaattctgg 30253303  T
Q  309 gaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacatt 373  Q
    |||| |||||| |||||| ||||||||| ||||||||||| |||| |||||||| | ||||||||    
T  30253302 gaaattaagtactggaacagtgtcagccgtttcatcttgtgctactataatctctatgccacatt 30253238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 30237592 - 30237698
Alignment:
Q  100 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcac 199  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  30237592 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgtcac 30237691  T
Q  200 aatgaag 206  Q
    |||||||    
T  30237692 aatgaag 30237698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 109 - 374
Target Start/End: Complemental strand, 30280972 - 30280707
Alignment:
Q  109 acctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcacaatgaagca 208  Q
    |||| ||||||||| ||||||| || ||||||| |||||||| | ||| ||| ||||| || |||||| || |||||   ||| | ||| ||||||| ||    
T  30280972 accttttcaattgacagaaggggtagtgtatcaactgggacattatctcggttatttagagcctttggcttaaatagtgggagttcgtcgcaatgaaaca 30280873  T
Q  209 catccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgttaattctgg 308  Q
    |||||||||||| |||  ||||| |||||| ||||| | || |||||||||||||| ||||||||  ||| ||||||||||  | | | |||| || |||    
T  30280872 catccacatcttttaatacaggacaatccaaggtatgtgatacacggtagaagcttcgaagttgtggcaactctcgaaaacatagagacgttagttttgg 30280773  T
Q  309 gaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 374  Q
    ||||||||  ||||||| |||||| || |||||||| ||  | ||||||||||| |||||||||||    
T  30280772 gaaaataaacattggaattgtgtctgctatttcatcatgagccacaataatctctacgccacattc 30280707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 177 - 374
Target Start/End: Complemental strand, 30173353 - 30173156
Alignment:
Q  177 tttgaataggacgagcttgtcacaatgaagcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttc 276  Q
    ||||||||| | ||||||||||||||||| |||||||| ||||  |||| ||||| |||||| ||||| | || || | ||||||||| |||||||| ||    
T  30173353 tttgaatagtaggagcttgtcacaatgaaacacatccatatctcttaaaacaggagaatccaaggtatgtgatgcatgatagaagcttcgaagttgtgtc 30173254  T
Q  277 aaatctcgaaaactcaaaaatgttaattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 374  Q
    || ||||  |||  || | ||||||||| ||| ||||||||  |||||  |||||||||||||||||| ||| ||||||||||||| | |||||||||    
T  30173253 aattctcttaaagacagagatgttaattttggaaaaataagctttggatttgtgtcagccatttcatcctgtgctacaataatctctatgccacattc 30173156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 109 - 373
Target Start/End: Complemental strand, 30161015 - 30160751
Alignment:
Q  109 acctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcacaatgaagca 208  Q
    |||| ||| |||||||| |||| || ||| ||| || ||||| |  |||||| ||||| |||||  || ||||||||   ||||||||||||||||| ||    
T  30161015 accttttcgattgagaggaggggtagtgtgtcaactaggacagtggcttggttatttagagactcaggcttgaatagttggagcttgtcacaatgaaaca 30160916  T
Q  209 catccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgttaattctgg 308  Q
    ||||||||||   |||   |||| |||||| ||||| | || |||||||||||||| ||||||||  ||| ||||||||||  | | | ||||||| |||    
T  30160915 catccacatcacttaataaaggacaatccaaggtatgtgatacacggtagaagcttcgaagttgtgacaattctcgaaaacatagagacgttaattttgg 30160816  T
Q  309 gaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacatt 373  Q
    ||||||||  ||||||| ||||||||| |||||||| ||  | ||||||||||| ||||||||||    
T  30160815 gaaaataaaaattggaattgtgtcagctatttcatcatgagccacaataatctctacgccacatt 30160751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 30031309 - 30031253
Alignment:
Q  288 actcaaaaatgttaattctgggaaaataagtattggaactgtgtcagccatttcatc 344  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  30031309 actcaaagatgttaattttgggaaaacaagtattggaactgtgtcagccatttcatc 30031253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 30225447 - 30225391
Alignment:
Q  288 actcaaaaatgttaattctgggaaaataagtattggaactgtgtcagccatttcatc 344  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  30225447 actcaaagatgttaattttgggaaaacaagtattggaactgtgtcagccatttcatc 30225391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 30104682 - 30104616
Alignment:
Q  296 atgttaattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctc 362  Q
    ||||||||| |||||||| ||||||||||||||  || ||||||||||| ||| | |||||| ||||    
T  30104682 atgttaattttgggaaaacaagtattggaactgcatcggccatttcatcctgtgcaacaatagtctc 30104616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University