View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4661_low_12 (Length: 343)

Name: NF4661_low_12
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4661_low_12
NF4661_low_12
[»] chr8 (3 HSPs)
chr8 (260-332)||(8056179-8056251)
chr8 (15-63)||(8055965-8056013)
chr8 (124-167)||(8056083-8056126)
[»] chr4 (1 HSPs)
chr4 (279-321)||(47491897-47491939)
[»] chr7 (1 HSPs)
chr7 (281-321)||(33834166-33834206)
[»] chr3 (3 HSPs)
chr3 (281-321)||(26926918-26926958)
chr3 (281-321)||(32515960-32516000)
chr3 (281-321)||(39018843-39018883)
[»] chr2 (1 HSPs)
chr2 (281-321)||(32667194-32667234)
[»] chr1 (1 HSPs)
chr1 (281-321)||(47086330-47086370)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 8056179 - 8056251
Alignment:
Q  260 aatagtttttgtcaggcaatttatataaactcctatcaagggtcttatctatatgatgtggggtctaactcat 332  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8056179 aatagtttttgtcagtcaatctatataaactcctatcaagggtcttatctatatgatgtggggtctaactcat 8056251  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 8055965 - 8056013
Alignment:
Q  15 agttgctattgcataaggggttataatctgtaatagattgggtgctaga 63  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8055965 agttgctattgcataaggggttataatctgtagtagattgggtgctaga 8056013  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 8056083 - 8056126
Alignment:
Q  124 gaaattgaaatgttagctcatgtttctagctattatgttctcaa 167  Q
    ||||||||| |||||  |||||||||||||||||||||||||||    
T  8056083 gaaattgaagtgttaaatcatgtttctagctattatgttctcaa 8056126  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 47491897 - 47491939
Alignment:
Q  279 tttatataaactcctatcaagggtcttatctatatgatgtggg 321  Q
    ||||||||||||||||||||| |||||||||||  ||||||||    
T  47491897 tttatataaactcctatcaagagtcttatctatccgatgtggg 47491939  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 33834206 - 33834166
Alignment:
Q  281 tatataaactcctatcaagggtcttatctatatgatgtggg 321  Q
    ||||||||||| ||||||| ||||||||||| |||||||||    
T  33834206 tatataaactcttatcaagagtcttatctatctgatgtggg 33834166  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 26926958 - 26926918
Alignment:
Q  281 tatataaactcctatcaagggtcttatctatatgatgtggg 321  Q
    ||||||||||| ||||||| ||||||||||| |||||||||    
T  26926958 tatataaactcttatcaagagtcttatctatctgatgtggg 26926918  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 32515960 - 32516000
Alignment:
Q  281 tatataaactcctatcaagggtcttatctatatgatgtggg 321  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  32515960 tatataaactcctatcaagagtcttatctatccgatgtggg 32516000  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 39018843 - 39018883
Alignment:
Q  281 tatataaactcctatcaagggtcttatctatatgatgtggg 321  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  39018843 tatataaactcctatcaagagtcttatctatccgatgtggg 39018883  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 32667234 - 32667194
Alignment:
Q  281 tatataaactcctatcaagggtcttatctatatgatgtggg 321  Q
    ||||||||||| ||||||| ||||||||||| |||||||||    
T  32667234 tatataaactcttatcaagagtcttatctatctgatgtggg 32667194  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 47086330 - 47086370
Alignment:
Q  281 tatataaactcctatcaagggtcttatctatatgatgtggg 321  Q
    ||||||||||| ||||||| ||||||||||| |||||||||    
T  47086330 tatataaactcttatcaagagtcttatctatctgatgtggg 47086370  T

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