View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661_low_15 (Length: 315)
Name: NF4661_low_15
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 38028628 - 38028784
Alignment:
| Q |
1 |
gtgagggaaaaatggtgatgctatctaagagtagcacaacaaaaagtttcaatatctgcacaatcttgttgtcgttcatagacttattaacactccactc |
100 |
Q |
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| T |
38028628 |
gtgagggaaaaatagtgatgctatctaagagtagcacaacaaaaagtttcaatatctgcacaatcttgttgtcgttcatagacttattaacactccactc |
38028727 |
T |
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| Q |
101 |
taaaaatggatcagatcaaagagtttttaatggaaacacaaaacaagtaagaaagca |
157 |
Q |
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| T |
38028728 |
taaaaatggatcagatcaaagagtttttaatggaaacacaaaacaagtaaggaagca |
38028784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 38028754 - 38028840
Alignment:
| Q |
210 |
ttaatggaaacacaaaacaactaaggaaccaatgatctcaaaacgatgccatcgcaagcagccaatcactaagattccaccgcatac |
296 |
Q |
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| T |
38028754 |
ttaatggaaacacaaaacaagtaaggaagcattgatctcaaaacgatgccatcgcaagcagccaatcactaagattctaccgcatac |
38028840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 31574520 - 31574564
Alignment:
| Q |
242 |
tgatctcaaaacgatgccatcgcaagcagccaatcactaagattc |
286 |
Q |
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| T |
31574520 |
tgatctcaaattgatgccatagcaagcagccaatcactaagattc |
31574564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 15150883 - 15150837
Alignment:
| Q |
158 |
attaagattaaaattaagcaataacaaataacggaaagtgaaaacta |
204 |
Q |
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| T |
15150883 |
attaagattaaaatattgcaataacaaataacagaaagtgaaaacta |
15150837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 6509332 - 6509376
Alignment:
| Q |
242 |
tgatctcaaaacgatgccatcgcaagcagccaatcactaagattc |
286 |
Q |
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| T |
6509332 |
tgatctcaaattgatgccataacaagcagccaatcactaagattc |
6509376 |
T |
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