View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661_low_16 (Length: 305)
Name: NF4661_low_16
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 7096554 - 7096808
Alignment:
| Q |
16 |
atgaacaaagaatttttattggtaacattaagcaagtgattcacgcagatagaaatttaaattaatttggtgattagaaactaatttggtgattagaaac |
115 |
Q |
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| T |
7096554 |
atgaacaaagaatttttattggtaaccttaagcaagtgattcacgcagatagaaatttaaattaat-------------------ttggtgattagaaac |
7096634 |
T |
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| Q |
116 |
tatcatacctcttttcacattcttcaaataaaggttcaactggaataattactgaaatccttatggcattcatcattgaacaagcatatgctgcaagaac |
215 |
Q |
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| T |
7096635 |
tatcatacctcttttcacattcttcagataaaggttcaactggaataattactgaaatccttatggcattcatcatcgaacaagcatatgctgcaagaac |
7096734 |
T |
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| Q |
216 |
atcgctgaaaaagaatgttacatgtttgctgttatctttattcatggaaaactcaacattctgaaaatttaaag |
289 |
Q |
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| T |
7096735 |
atcgctgaaaaagaatgttacatgtttgttgttatctttattcatggaaaactcaacattctgaaaatttaaag |
7096808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 32492577 - 32492500
Alignment:
| Q |
198 |
agcatatgctgcaagaacatcgctgaaaaagaatgttacatgtttgctgttatc-tttattcatggaaaactcaacatt |
275 |
Q |
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| T |
32492577 |
agcatatgctgcaagaacatcgctg-aaaaggatgttacatgtttactgttatcttttattcatggacaactcaacatt |
32492500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 7584501 - 7584453
Alignment:
| Q |
31 |
ttattggtaacattaagcaagtgattcacgcagatagaaatttaaatta |
79 |
Q |
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| T |
7584501 |
ttattggtaacattaagcaagtgattaatgcagatagaaatttaaatta |
7584453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 32 - 289
Target Start/End: Original strand, 17980763 - 17981008
Alignment:
| Q |
32 |
tattggtaacattaagcaagtgattcacgcagatagaaatttaaattaatttggtgattagaaactaatttggtgattagaaactatcatacctcttttc |
131 |
Q |
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| T |
17980763 |
tattgctaacattaagcaagtgattcatgcagatagaaatttaaatta------------gaaacttatttggcgattagaaactatcataccttttctc |
17980850 |
T |
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| Q |
132 |
acattcttcaaataaaggttcaactggaataattactgaaatccttatggcattcatcattgaacaagcatatgctgcaagaacatcgctgaaaaagaat |
231 |
Q |
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| T |
17980851 |
acattcttcaaataaaggttcaa-tggagtatttactgaaatcattggggcattcatcatgtgacaagtatatgctgcgagaacatcgctg-aaaagaat |
17980948 |
T |
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| Q |
232 |
gttacatgtttgctgttatc--tttattcatggaaaactcaacattctgaaaatttaaag |
289 |
Q |
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| T |
17980949 |
gttacacatttactgttatctttttattcatggaaaactcaacattttgcaaatctaaag |
17981008 |
T |
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