View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661_low_2 (Length: 479)
Name: NF4661_low_2
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 9935633 - 9935167
Alignment:
| Q |
1 |
caaatgttgattattcaacaacattatcttcaccggaatattttccgctcttatagtagctaactcttgaacattcatcaaaaaactaccatctccgtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935633 |
caaatgttgattattcaacaacattatcttcaccggaatattttccgctcttatagtagctaactcttgaacattcatcaaaaaactaccatctccgtca |
9935534 |
T |
|
| Q |
101 |
atgtcaacaacgatggcattagggttagcaattgcggcaccaattgcagcaggtaatccgaaacccatagcaccaagtccaccggaagttaaccactgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
9935533 |
atgtcaacaacgatggcattagggttagcaattgcggcaccaattgcagcaggtaatccgaaacccattgcaccaagtccaccagaagttaaccactgcc |
9935434 |
T |
|
| Q |
201 |
taggtctcttgtatttgtaaaattgagcagcccacatttgatgttgtccaacaccagtagtaacaatagcatcaccattagttaactcttcaagcatctt |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935433 |
taggtctcttgtatttgtagaattgagcagcccacatttgatgttgtccaacaccagtagtaacaatagcatcaccattagttaactcttcaagcatctt |
9935334 |
T |
|
| Q |
301 |
aattgcatattgaggcgaaatggcattctcaaatctcttaaaagcaagaggaaatttcagcttctgcacattcaactcctgtctccatgcctcaaaatca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935333 |
aattgcatattgaggcgaaatggcattctcaaatctcttaaaagcaagaggaaatttcagcttctgcacattcaactcctgtctccatgcctcaaaatca |
9935234 |
T |
|
| Q |
401 |
agtttccccttgattcctttactctccaaaactctattaagaccttccaacgccaccttcatctcag |
467 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9935233 |
agtttccccttgattcctttactctccaaaactctattaagaccttccaacgccaccttcatatcag |
9935167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 259
Target Start/End: Complemental strand, 3473053 - 3472799
Alignment:
| Q |
5 |
tgttgattattcaacaacattatcttcaccggaatattttccgctcttatagtagctaactcttgaacattcatcaaaaaactaccatctccgtcaatgt |
104 |
Q |
| |
|
||||||||||||||||||| |||||| || || | ||| ||| | | |||||||| || || ||||||||||||| |||||| ||||| || || |||| |
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| T |
3473053 |
tgttgattattcaacaacaatatcttaacagggagattctccaccttgatagtagccaattcctgaacattcatcataaaacttccatcaccatcgatgt |
3472954 |
T |
|
| Q |
105 |
caacaacgatggcattagggttagcaattgcggcaccaattgcagcaggtaatccgaaacccatagcaccaagtccaccggaagttaaccactgcctagg |
204 |
Q |
| |
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|||| || || || | || || |||| || || || || ||||| || ||||| || |||||||| ||||| ||| | || || ||||||||||| || |
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| T |
3472953 |
caaccacaatagcgtcgggattggcaacagcagctcccatggcagccggcaatccaaatcccatagcgccaagaccagcagatgtcaaccactgccttgg |
3472854 |
T |
|
| Q |
205 |
tctcttgtatttgtaaaattgagcagcccacatttgatgttgtccaacaccagta |
259 |
Q |
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||||||||| | ||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
3472853 |
tctcttgtacctataaaactgagcagcccacatctgatgttgtccaacaccagta |
3472799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 45477579 - 45477118
Alignment:
| Q |
1 |
caaatgttgattattcaacaacattatcttcaccggaatattttccgctcttatagtagctaactcttgaacattcatcaaaaaactaccatctccgtca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| ||| || ||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |
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| T |
45477579 |
caaatgttgattattcaacaacaggatcttaaccggaagattctctactcttatagtagctaactcttgaacgttcatcataaaactaccatccccgtca |
45477480 |
T |
|
| Q |
101 |
atgtcaacaacgatggcattagggttagcaattgcggcaccaattgcagcaggtaatccgaaacccatagcaccaagtccaccggaagttaaccactgcc |
200 |
Q |
| |
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|| ||||| || || |||| ||||||||||| || ||||| || |||||||||||||| |||||||| |||||||||||||| |||||||||||||||| |
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| T |
45477479 |
atatcaacgacaattgcatcagggttagcaacagcagcaccgatagcagcaggtaatccaaaacccatggcaccaagtccaccagaagttaaccactgcc |
45477380 |
T |
|
| Q |
201 |
taggtctcttgtatttgtaaaattgagcagcccacatttgatgttgtccaacaccagtagtaacaatagcatcaccattagttaactcttcaagcatctt |
300 |
Q |
| |
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|||||||||| || |||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||| |||||||| || ||||| ||||||| || |
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| T |
45477379 |
taggtctcttatacttgtaaaactgagcagaccacatttgatgctgtccaacaccagtactaacaatagcgtcaccattcgtcaactcatcaagcacctg |
45477280 |
T |
|
| Q |
301 |
aattgcatattgaggcgaaatggcattctcaaatctcttaaaagcaagaggaaatttcagcttctgcacattcaactcctgtctccatgcctcaaaatca |
400 |
Q |
| |
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||| ||||| ||||||||||| |||| ||||||| |||||||| ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |
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| T |
45477279 |
aatagcatactgaggcgaaatagcatcctcaaatgtcttaaaaccaagaggaaattttaacttctgcacattcaactcctgcctccatgcctcaaaatca |
45477180 |
T |
|
| Q |
401 |
agtttccccttgattcctttactctccaaaactctattaagaccttccaacgccaccttcat |
462 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45477179 |
agcttccccttgattcctttactctccaaaactctattaagaccttccaacgccaccttcat |
45477118 |
T |
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