View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4661_low_22 (Length: 253)
Name: NF4661_low_22
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 56160478 - 56160244
Alignment:
| Q |
19 |
tcttcttctcttattgaatccaatctactttccttcttcatatttatctcaaacagctcttctgaatcaccatcatcgatg------ccgaaattgtaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
56160478 |
tcttcttctcttattgaatccaatctactttccttcttcatatttatctcaaacagctcttctgaatcaccatcatcgtcgtcgtctccgaaattgtaat |
56160379 |
T |
|
| Q |
113 |
caaacacttggcttttcttgaacccaataaaaccacaaccacaactggagatttcatcatcgtagtagtgcaagcactc---------attatcatgctt |
203 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
56160378 |
caaatacttggcttttcttgaacccaataaaaccacaaccacaactggagatttcatcatcgtagtagtgcaagcactcaacatctttaatatcatgctt |
56160279 |
T |
|
| Q |
204 |
agttggcatcacatataatgttttgttcatctcat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
56160278 |
agttggcatcacatataatgttttgttcatgtcat |
56160244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 38933441 - 38933406
Alignment:
| Q |
194 |
tatcatgcttagttggcatcacatataatgttttgt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38933441 |
tatcatgcttagttggcatcacatataatgttttgt |
38933406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University