View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661_low_24 (Length: 249)
Name: NF4661_low_24
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 7096354 - 7096114
Alignment:
| Q |
1 |
taattctgctgttagtcgaaatattcagctttccatggatgatccaaatgttgaatcacataaaggtaacataggctactctcaggtgtcagttgtggtt |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7096354 |
taattctgctgttagtcgaaatattcagccttccatggatgatccaaatgttgaatcacataaaggtaacataggctactctcaggtatcagttgtggtt |
7096255 |
T |
|
| Q |
101 |
gatttttctaattcttttttcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaatatttaaatttaaatggtttatcatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7096254 |
gatttttctaattcttttttcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaatatttaaatttaaatggtttatcatttg |
7096155 |
T |
|
| Q |
201 |
tcattaataatagtgcatcaatgtcgtcattggagtataat |
241 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||||| |
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| T |
7096154 |
tcattaataatagtgcattaatgtcgtcattggattataat |
7096114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 7584826 - 7585012
Alignment:
| Q |
19 |
aaatattcagctttccatggatgatccaaatgttgaatcacataaaggtaacataggctactctcaggtgtcagttgtggttgatttttctaattctttt |
118 |
Q |
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|||||| |||||||||||||||| |||||||| | |||||||||||||||| ||||||| ||||||||||| ||||| ||||||||| ||| | |
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| T |
7584826 |
aaatatccagctttccatggatggtccaaatggtaaatcacataaaggtaaattaggctatgctcaggtgtcatttgtgattgatttttgtaaaaaaata |
7584925 |
T |
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| Q |
119 |
ttcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaatatttaaatttaaatgg-tttatcatttgtcatta |
206 |
Q |
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| T |
7584926 |
t-catctatttaaaa-caataactattgaatattggcatatcataattaagaaatatttaaatttaaatggttttatcatttgtcatta |
7585012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 17980484 - 17980299
Alignment:
| Q |
19 |
aaatattcagctttccatggatgatccaaatgttgaatcacataaaggtaacataggctactctcaggtgtcagttgtggttgatttttctaattctttt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| ||| |
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| T |
17980484 |
aaatattcagctttccatggatgatccaaatgttgaatcacataaaggtaacttaggctattctcaggtgtcatttgtggttgatttttgtaaaaaaaaa |
17980385 |
T |
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| Q |
119 |
ttcatctatttaaaaacaaaagctattgaaca-tcggcatatcataattaagaaatatttaaatttaaatggtttatcatttgtca |
203 |
Q |
| |
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| T |
17980384 |
atcatctattttaaaacaaaaaatactgaaaattcagcatatgataattaagaaatatttaaatttaaatggtttatcatttgtca |
17980299 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 9623885 - 9623999
Alignment:
| Q |
84 |
aggtgtcagttgtggttgatttttctaattcttttttcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaa-tatttaaatt |
182 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| || |||||| |
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| T |
9623885 |
aggtgtcagttgtagttgatttttgtaatt--tttttcatctatttaaaaacaaaaactattgaacattggcatatcataattaaaaaattaaataaatt |
9623982 |
T |
|
| Q |
183 |
taaatggtttatcattt |
199 |
Q |
| |
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||||||||||||||||| |
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| T |
9623983 |
taaatggtttatcattt |
9623999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 9623625 - 9623702
Alignment:
| Q |
19 |
aaatattcagctttccatggatgatccaaatgttgaatcacataaaggtaacataggctactctcaggtgtcagttgt |
96 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
9623625 |
aaatattcagctttccatgcaggatccaaatgttgaatcacataaaggtaacctaggctaatctcaggtgtcagttgt |
9623702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 13613360 - 13613246
Alignment:
| Q |
84 |
aggtgtcagttgtggttgatttttctaattcttttttcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaa-tatttaaatt |
182 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| || |||||| |
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| T |
13613360 |
aggtgtcagttgtagttgatttttgtaatt--tttttcatctatttaaaaacaaaaactattgaacattggcatatcataattaaaaaattaaataaatt |
13613263 |
T |
|
| Q |
183 |
taaatggtttatcattt |
199 |
Q |
| |
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||||||||||||||||| |
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|
| T |
13613262 |
taaatggtttatcattt |
13613246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 13613620 - 13613543
Alignment:
| Q |
19 |
aaatattcagctttccatggatgatccaaatgttgaatcacataaaggtaacataggctactctcaggtgtcagttgt |
96 |
Q |
| |
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||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
13613620 |
aaatattcagctttccatgcaggatccaaatgttgaatcacataaaggtaacctaggctaatctcaggtgtcagttgt |
13613543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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