View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661_low_25 (Length: 248)
Name: NF4661_low_25
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 24370140 - 24370374
Alignment:
| Q |
1 |
tttcatctcatgcaatccttttttcacaattctcatcaagccaattaatctggtagaacatactcgggtaggatgcacaaacacaatttttactacatat |
100 |
Q |
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| T |
24370140 |
tttcatctcatgcaatccatttttcacaattctcatcaagccaattaatctggtagaacatactcgggtaggatgcacaaacacaatttttactacatat |
24370239 |
T |
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| Q |
101 |
attcatttatgctgcgattataaattatgatgattgataatagtat--catactatgcagtctgtaccagatttaaaaggggttattgataacaaggaca |
198 |
Q |
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| T |
24370240 |
attcatttatgctgtgattataaattatgatgattgataatagtattatatactatgcagtctgtaccagatttaaaaggggttattgagaacaaggaca |
24370339 |
T |
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| Q |
199 |
caaatgtgatgctgctgattgggaaaagatcatgg |
233 |
Q |
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| T |
24370340 |
caaatgtgatgctgctgattgggaaaagatcatgg |
24370374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 107 - 233
Target Start/End: Complemental strand, 24364295 - 24364169
Alignment:
| Q |
107 |
ttatgctgcgattataaattatgatgattgataatagtatcatactatgcagtctgtaccagatttaaaaggggttattgataacaaggacacaaatgtg |
206 |
Q |
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|||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24364295 |
ttatgctgtgattataagttatgatgattgataatagtattatactatgcagtctgtaccagatttaaaaggggttattgagaacaaggacacaaatgtg |
24364196 |
T |
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| Q |
207 |
atgctgctgattgggaaaagatcatgg |
233 |
Q |
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| T |
24364195 |
atgctgctgattgggaaaagatcatgg |
24364169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 24355839 - 24355967
Alignment:
| Q |
107 |
ttatgctgcgattataaattatgatgattgataatagtatcatac--tatgcagtctgtaccagatttaaaaggggttattgataacaaggacacaaatg |
204 |
Q |
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| T |
24355839 |
ttatgttgtgattataaattaatatgattgataatactattataccatatgcagaatgtaccaaattttaaaggggttattgagaacaaagagaaggatg |
24355938 |
T |
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| Q |
205 |
tgatgctgctgattgggaaaagatcatgg |
233 |
Q |
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||||||| | ||||||||||||||||||| |
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| T |
24355939 |
tgatgcttcagattgggaaaagatcatgg |
24355967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24355718 - 24355759
Alignment:
| Q |
1 |
tttcatctcatgcaatccttttttcacaattctcatcaagcc |
42 |
Q |
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| T |
24355718 |
tttcatctcatgcaatccttttttcacaattctcatcaagcc |
24355759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 24346776 - 24346860
Alignment:
| Q |
149 |
tactatgcagtctgtaccagatttaaaaggggttattgataacaaggacacaaatgtgatgctgctgattgggaaaagatcatgg |
233 |
Q |
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||||||||||| ||||||| |||||| ||||||||||| ||||| || | |||||||||||| ||||||||||||||||||| |
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| T |
24346776 |
tactatgcagtgtgtaccaactttaaatggggttattgagaacaaagaaaagtatgtgatgctgcagattgggaaaagatcatgg |
24346860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 24359177 - 24359296
Alignment:
| Q |
117 |
attataaattatgatgattgataatagtatcatactatgcagtctgtacc---agatttaaaaggggttattgataacaaggacacaaatgtgatgctgc |
213 |
Q |
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|||||| ||||| |||||||||||||||| || ||||||||| |||||| ||||||||||||| ||||||| ||||| || | ||||| | |||| |
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| T |
24359177 |
attatatattatagtgattgataatagtattatgctatgcagtttgtacctttagatttaaaagggattattgagaacaaagagaagaatgttcttctgc |
24359276 |
T |
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| Q |
214 |
tgattgggaaaagatcatgg |
233 |
Q |
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||||||||||| ||||||| |
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| T |
24359277 |
agattgggaaaaaatcatgg |
24359296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 24362586 - 24362642
Alignment:
| Q |
2 |
ttcatctcatgcaatccttttttcacaattctcatcaagccaattaatctggtagaa |
58 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||| | | ||||||||||| |
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| T |
24362586 |
ttcatctcaagcaatccttttttcacaattctcataaagcctaatcatctggtagaa |
24362642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 24362730 - 24362812
Alignment:
| Q |
151 |
ctatgcagtctgtaccagatttaaaaggggttattgataacaaggacacaaatgtgatgctgctgattgggaaaagatcatgg |
233 |
Q |
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| T |
24362730 |
ctatgcagtgtgtaccaaatttagaaggggttattgagaacaaagagaagtatgtggttctgcagattgggaaaagatcatgg |
24362812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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