View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4661_low_33 (Length: 226)

Name: NF4661_low_33
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4661_low_33
NF4661_low_33
[»] chr5 (3 HSPs)
chr5 (6-226)||(3522455-3522675)
chr5 (110-220)||(26449072-26449190)
chr5 (169-206)||(39466671-39466708)
[»] chr8 (1 HSPs)
chr8 (119-226)||(32897622-32897737)
[»] chr2 (3 HSPs)
chr2 (168-224)||(29463290-29463346)
chr2 (188-220)||(1529388-1529420)
chr2 (119-151)||(13527103-13527135)
[»] chr1 (3 HSPs)
chr1 (169-220)||(42471282-42471333)
chr1 (165-209)||(30210222-30210265)
chr1 (188-220)||(47666584-47666616)
[»] scaffold0474 (1 HSPs)
scaffold0474 (169-225)||(11330-11386)
[»] chr7 (2 HSPs)
chr7 (119-165)||(42078145-42078191)
chr7 (164-225)||(28109304-28109365)
[»] chr4 (2 HSPs)
chr4 (119-221)||(26619934-26620044)
chr4 (167-220)||(34667161-34667214)
[»] scaffold0377 (1 HSPs)
scaffold0377 (110-165)||(11935-11990)
[»] chr3 (2 HSPs)
chr3 (110-165)||(40417622-40417677)
chr3 (119-155)||(45818038-45818073)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 3522675 - 3522455
Alignment:
Q  6 aattaggatatgaattttctgttcccaatcaatttcaattggcttttgcacacggtggagatggcagtgttgttaattttttcttatcataataagtgtg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  3522675 aattaggatatgaattttctgttcccaatcaatttcaattggctgttgcacacggtggaggtggcagcgttgttaattttttcttatcataataagtgtg 3522576  T
Q  106 tacccaaagacacgataggataaaataatgttatcatctttcttatcatgcatgcaccaataggataaatgtctatcatgttactatcatatcatatctt 205  Q
    || ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||    
T  3522575 tatccaaacacacgataggataaaataatgttatcatcttttttatcatgcgtgcaccaataggataaatgtttatcatgttactatcatattatatctt 3522476  T
Q  206 tatctattttctaattatatc 226  Q
    |||||||||||||||||||||    
T  3522475 tatctattttctaattatatc 3522455  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 26449072 - 26449190
Alignment:
Q  110 caaagacacgataggataaaataatgttatcatctttcttatcatgcatgcaccaa--------taggataaatgtctatcatgttactatcatatcata 201  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||||   ||||||||        |||||||| |||||||||||| ||||||||||||||    
T  26449072 caaacacatgataggataaaataatgatatcatctttcttatcatatgtgcaccaaaagcatgataggataagtgtctatcatgtcactatcatatcata 26449171  T
Q  202 tctttatctattttctaat 220  Q
    | |||||| ||||||||||    
T  26449172 tttttatccattttctaat 26449190  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 39466671 - 39466708
Alignment:
Q  169 gataaatgtctatcatgttactatcatatcatatcttt 206  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  39466671 gataaatgtatatcctgttactatcatatcatatcttt 39466708  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 32897622 - 32897737
Alignment:
Q  119 gataggataaaataatgttatcatctttcttatcatgcatgcaccaa--------taggataaatgtctatcatgttactatcatatcatatctttatct 210  Q
    |||||||||||| ||||||||| |||||||||||||   ||||||||        ||||||||||||||||||||| |||||| ||||||||||| |||     
T  32897622 gataggataaaaaaatgttatcctctttcttatcatatctgcaccaaacgtatgataggataaatgtctatcatgtcactatcctatcatatcttgatcc 32897721  T
Q  211 attttctaattatatc 226  Q
    |||||||||| |||||    
T  32897722 attttctaatcatatc 32897737  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 29463290 - 29463346
Alignment:
Q  168 ggataaatgtctatcatgttactatcatatcatatctttatctattttctaattata 224  Q
    |||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||    
T  29463290 ggataaatgtttatcatgtcactatcatatcttatcttcatctattttctaattata 29463346  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 1529420 - 1529388
Alignment:
Q  188 actatcatatcatatctttatctattttctaat 220  Q
    |||||||||||||||||||||| ||||||||||    
T  1529420 actatcatatcatatctttatccattttctaat 1529388  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 13527135 - 13527103
Alignment:
Q  119 gataggataaaataatgttatcatctttcttat 151  Q
    |||||||||||||||||||||||| ||||||||    
T  13527135 gataggataaaataatgttatcatatttcttat 13527103  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 42471333 - 42471282
Alignment:
Q  169 gataaatgtctatcatgttactatcatatcatatctttatctattttctaat 220  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||||||    
T  42471333 gataaatgtctatcatatcattatcatatcatatctttatctattttctaat 42471282  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 30210222 - 30210265
Alignment:
Q  165 ataggataaatgtctatcatgttactatcatatcatatctttatc 209  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||    
T  30210222 ataggataaatgt-tatcatgtcattatcatatcatatctttatc 30210265  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 47666616 - 47666584
Alignment:
Q  188 actatcatatcatatctttatctattttctaat 220  Q
    ||||||||||| |||||||||||||||||||||    
T  47666616 actatcatatcctatctttatctattttctaat 47666584  T

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Target: scaffold0474 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 11330 - 11386
Alignment:
Q  169 gataaatgtctatcatgttactatcatatcatatctttatctattttctaattatat 225  Q
    ||||||||| |||||||| |||||||||  ||||||||||| |||||||||||||||    
T  11330 gataaatgtttatcatgtcactatcatactatatctttatcaattttctaattatat 11386  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 42078145 - 42078191
Alignment:
Q  119 gataggataaaataatgttatcatctttcttatcatgcatgcaccaa 165  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||    
T  42078145 gatatgataaaataatgttatcatatttcttatcatgcgtgcaccaa 42078191  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 28109304 - 28109365
Alignment:
Q  164 aataggataaatgtctatcatgttactatcatatcatatctttatctattttctaattatat 225  Q
    |||| ||||||||| ||| | |||||||||||||| |||||||||| | ||||| |||||||    
T  28109304 aatatgataaatgtttattacgttactatcatatcttatctttatccagtttcttattatat 28109365  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 26620044 - 26619934
Alignment:
Q  119 gataggataaaataatgttatcatctttcttatcatgcatgcaccaat--------aggataaatgtctatcatgttactatcatatcatatctttatct 210  Q
    |||| |||||||||||| |||||| ||| |||||||||||||| |||         |||||||||||||||||||||| ||||||||| |||  ||||      
T  26620044 gataagataaaataatgctatcatattttttatcatgcatgcatcaaatgcatgaaaggataaatgtctatcatgttattatcatatcctattcttattc 26619945  T
Q  211 attttctaatt 221  Q
    |||||||||||    
T  26619944 attttctaatt 26619934  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 34667161 - 34667214
Alignment:
Q  167 aggataaatgtctatcatgttactatcatatcatatctttatctattttctaat 220  Q
    ||||||||| | |||||||| ||||||||||| |||||||||| ||||| ||||    
T  34667161 aggataaatatttatcatgtcactatcatatcctatctttatccattttttaat 34667214  T

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Target: scaffold0377 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 11935 - 11990
Alignment:
Q  110 caaagacacgataggataaaataatgttatcatctttcttatcatgcatgcaccaa 165  Q
    |||| ||| |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  11935 caaaaacatgatatgataaaataatgttatcatatttcctatcatgcgtgcaccaa 11990  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 40417622 - 40417677
Alignment:
Q  110 caaagacacgataggataaaataatgttatcatctttcttatcatgcatgcaccaa 165  Q
    |||| ||| |||| |||||||||||| |||||| ||||||||||||| ||||||||    
T  40417622 caaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaa 40417677  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 45818073 - 45818038
Alignment:
Q  119 gataggataaaataatgttatcatctttcttatcatg 155  Q
    |||||||||||||||||||||| ||||||||||||||    
T  45818073 gataggataaaataatgttatc-tctttcttatcatg 45818038  T

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