View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4661_low_35 (Length: 217)

Name: NF4661_low_35
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4661_low_35
NF4661_low_35
[»] chr6 (34 HSPs)
chr6 (11-199)||(30132365-30132554)
chr6 (63-193)||(24884846-24884978)
chr6 (11-195)||(29950056-29950243)
chr6 (11-132)||(30149180-30149302)
chr6 (27-187)||(24941869-24942032)
chr6 (11-187)||(24934320-24934499)
chr6 (40-187)||(29953861-29954011)
chr6 (41-187)||(30053110-30053259)
chr6 (11-135)||(21160846-21160971)
chr6 (41-137)||(30154183-30154280)
chr6 (11-185)||(24739364-24739541)
chr6 (63-122)||(30134858-30134917)
chr6 (37-139)||(30577985-30578088)
chr6 (64-195)||(29882142-29882275)
chr6 (64-195)||(29909298-29909431)
chr6 (64-192)||(28926709-28926839)
chr6 (64-195)||(29099050-29099183)
chr6 (64-195)||(29115968-29116101)
chr6 (58-106)||(30028839-30028887)
chr6 (64-195)||(29073470-29073603)
chr6 (64-195)||(29106043-29106176)
chr6 (64-195)||(29348757-29348890)
chr6 (71-132)||(31000162-31000223)
chr6 (66-126)||(29887006-29887066)
chr6 (64-124)||(29894260-29894320)
chr6 (64-124)||(29897784-29897844)
chr6 (65-124)||(29084726-29084785)
chr6 (70-132)||(24730568-24730630)
chr6 (64-150)||(24886725-24886813)
chr6 (72-124)||(29358211-29358263)
chr6 (64-124)||(29834922-29834982)
chr6 (64-124)||(29866356-29866416)
chr6 (68-124)||(29889231-29889287)
chr6 (64-124)||(29905346-29905406)
[»] scaffold0110 (1 HSPs)
scaffold0110 (11-187)||(44036-44215)
[»] chr3 (2 HSPs)
chr3 (19-187)||(24226481-24226652)
chr3 (69-115)||(9628562-9628608)
[»] chr4 (1 HSPs)
chr4 (27-187)||(44262760-44262923)
[»] scaffold0573 (1 HSPs)
scaffold0573 (64-192)||(3844-3974)
[»] chr5 (1 HSPs)
chr5 (64-137)||(20888445-20888515)
[»] scaffold0054 (1 HSPs)
scaffold0054 (64-195)||(53755-53888)
[»] chr1 (1 HSPs)
chr1 (60-195)||(19489953-19490090)
[»] scaffold0237 (1 HSPs)
scaffold0237 (64-195)||(22050-22183)
[»] chr2 (2 HSPs)
chr2 (70-132)||(15063100-15063162)
chr2 (70-126)||(32760457-32760513)
[»] chr7 (1 HSPs)
chr7 (64-100)||(38144976-38145012)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 30132365 - 30132554
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaacaagagttgaacctaatgttgttactta-tagttctttaatggatggttatttctt 109  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  30132365 gagagatgaaaaaagttagcaatgcgttggctgtaatgataaaacaagagttgaacttaatgttgttacttaatagttctttaatggatggttatttctt 30132464  T
Q  110 ggttaaagaagtgaacatggccacatatattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctacactatcatggttg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30132465 ggttaaagaagtgaacatggccacatatattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctacactaacatggttg 30132554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 193
Target Start/End: Original strand, 24884846 - 24884978
Alignment:
Q  63 gaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggccacata--tattcaaaactatgcctcaaaggg 160  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||| |||||  ||| ||| |    
T  24884846 gaacctaatgttgttacttatacttctttaatggatggttatttcttggttaaagaagtgaacaaggccacatatgtattcaacactattgctcgaagtg 24884945  T
Q  161 gaatgattcctgatgttcagagctacactatca 193  Q
    || |||||||| ||||||| ||||||| |||||    
T  24884946 gagtgattccttatgttcaaagctacaatatca 24884978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 29950243 - 29950056
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaacaa-gagttgaacctaatgttgttacttatagttctttaatggatggttatttctt 109  Q
    ||||| ||||||||| |||| ||| ||||||||| |||||||||||| | || |||||| || |||||||||||||||||||||||||||||||||||||    
T  29950243 gagaggtgaaaaaagctagacatgtgttggctgttatgataaaacaacgtgtggaacctgatattgttacttatagttctttaatggatggttatttctt 29950144  T
Q  110 ggttaaagaagtgaacatggcc--acatatattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctacactatcatg 195  Q
    |||||||||||| |||| ||||  |||| ||||||| ||  | |||| ||||||| ||| |||| |||||   ||||||| |||||||    
T  29950143 ggttaaagaagtcaacaaggccaaacatctattcaacacccttcctctaaggggagtgactcctaatgtttttagctacaatatcatg 29950056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 30149180 - 30149302
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaacaa-gagttgaacctaatgttgttacttatagttctttaatggatggttatttctt 109  Q
    ||||| ||||||||| |||| ||| ||||||||| |||||||||||| | || |||||| || |||||||||||||||||||||||||||||||||||||    
T  30149180 gagaggtgaaaaaagctagatatgtgttggctgttatgataaaacaacgtgtggaacctgatattgttacttatagttctttaatggatggttatttctt 30149279  T
Q  110 ggttaaagaagtgaacatggcca 132  Q
    |||||||||||| |||| |||||    
T  30149280 ggttaaagaagtcaacaaggcca 30149302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 187
Target Start/End: Original strand, 24941869 - 24942032
Alignment:
Q  27 tagaaatgcgttggctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaac 125  Q
    |||||||| ||| ||||| |||||||||||||  || |||||||||||||||||||||| |||||| |||||||| | ||||||||||||||||||||||    
T  24941869 tagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttacttatacttctttgatggatgggtgtttcttggttaaagaagtgaac 24941968  T
Q  126 atggccacata--tattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    | |||||||||  ||||||| |||||| ||||||| ||| ||  |||| || |||| |||||||    
T  24941969 agggccacatatgtattcaacactatggctcaaagaggagtggctcctaatcttcatagctaca 24942032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 24934320 - 24934499
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttctt 109  Q
    ||||||||||||||| |||||||| ||| ||||| |||||||||||||  || ||  ||||| |||||||||||| ||||||||||||||| ||||||||    
T  24934320 gagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggattctaatattgttacttataattctttaatggatgggtatttctt 24934419  T
Q  110 ggttaaagaagtgaacatggccaca--tatattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    ||| ||| ||| ||| | |||||||  | | ||||| |||||| ||  ||||||| ||| |||||||||||| |||||||    
T  24934420 ggtcaaacaagagaataaggccacatttgtgttcaacactatggctagaaggggagtgactcctgatgttcaaagctaca 24934499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 29954011 - 29953861
Alignment:
Q  40 gctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggccacat--a 136  Q
    ||||| |||||||||||||  || |||||||||||||||||||||| |||||| |||||||| |||||| | ||||||||||| |||| ||||||||  |    
T  29954011 gctgttatgataaaacaaggtgtggaacctaatgttgttacttatacttctttgatggatgggtatttcctagttaaagaagtcaacaaggccacatata 29953912  T
Q  137 tattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    ||||||| |||||  ||||||||||| ||| ||||||  |||| |||||||    
T  29953911 tattcaacactattgctcaaaggggagtgactcctgaacttcatagctaca 29953861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 30053110 - 30053259
Alignment:
Q  41 ctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcc--acatat 137  Q
    |||| |||||||||||||  || |||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||| |||| ||||  |||| |    
T  30053110 ctgttatgataaaacaaggcgtggaacctaatgttgttacttatacttctttgatggatgggtatttcttggtaaaagaagtcaacaaggccaaacatgt 30053209  T
Q  138 attcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    |||||| |||||  ||| ||||||| ||| |||| ||||||| |||||||    
T  30053210 attcaacactatttctctaaggggagtgactcctaatgttcatagctaca 30053259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 21160971 - 21160846
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttctt 109  Q
    ||||||||||||||| |||||| | ||| ||| | |||||||||||||  || |||| |||||||||||||||||||| ||| |||||||| ||||||||    
T  21160971 gagagatgaaaaaagctagaaaagtgttagcttttatgataaaacaaggcgtggaacttaatgttgttacttatagttttttgatggatgggtatttctt 21160872  T
Q  110 ggttaaagaagtgaacatggccacat 135  Q
    ||| ||||||||||| | ||||||||    
T  21160871 ggtcaaagaagtgaataaggccacat 21160846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 30154183 - 30154280
Alignment:
Q  41 ctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggccacatat 137  Q
    |||| |||||||||||| | || |||||| ||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| | ||||||||||    
T  30154183 ctgttatgataaaacaacatgtggaacctgatgttgttacttataattctttgatggatgggtatttcttggttaaagaagtgaataaggccacatat 30154280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 24739541 - 24739364
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaac-aagagttgaacctaatgttgttacttatagttctttaatggatggttatttctt 109  Q
    ||||||||||||||| |||||||| ||| ||||| |||||||||| ||| || || ||| ||||  ||||||||| |||||| |||||||| ||||||||    
T  24739541 gagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaagtgtggatcctgatgtcattacttataattctttgatggatgggtatttctt 24739442  T
Q  110 ggttaaagaagtgaacatggccaca--tatattcaaaactatgcctcaaaggggaatgattcctgatgttcagagcta 185  Q
    ||| ||| ||| ||| | |||||||  | | ||||| |||||| ||  ||||||| ||| |||||||||||| |||||    
T  24739441 ggtcaaacaagagaataaggccacatttgtgttcaacactatggctagaaggggagtgactcctgatgttcatagcta 24739364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 30134858 - 30134917
Alignment:
Q  63 gaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtg 122  Q
    ||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||    
T  30134858 gaacctaatgttgttacttatagttttttaatggatagatatttcttggttaaagaagtg 30134917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 30578088 - 30577985
Alignment:
Q  37 ttggctgtaatgataaaacaa-gagttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggccacat 135  Q
    |||||||| |||||||||||| | ||  ||||| |||||||||||| |||||||||||| ||||| ||||||||||||||| ||| ||||| ||| | ||    
T  30578088 ttggctgttatgataaaacaaagtgtgaaacctgatgttgttacttgtagttctttaatagatgggtatttcttggttaaaaaagcgaacaaggctagat 30577989  T
Q  136 atat 139  Q
    ||||    
T  30577988 atat 30577985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 29882142 - 29882275
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcc-aca-tatattcaaaactatgcctcaaagggg 161  Q
    ||||| ||||||||||||| || |||||||||||||| ||||   |||| || |||||||||| |||| | | ||||||||| |||||| |||| |||||    
T  29882142 aacctgatgttgttacttacagctctttaatggatggatattgtctggtaaatgaagtgaacaaggccgagagtatattcaacactatgtctcatagggg 29882241  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| | || ||||||||||||||| |||||||    
T  29882242 agtgactgctaatgttcagagctacagtatcatg 29882275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 29909298 - 29909431
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcc-aca-tatattcaaaactatgcctcaaagggg 161  Q
    ||||| ||||||||||||| || |||||||||||||| ||||   |||| || |||||||||| |||| | | ||||||||| |||||| |||| |||||    
T  29909298 aacctgatgttgttacttacagctctttaatggatggatattgtctggtaaatgaagtgaacaaggccgagagtatattcaacactatgtctcatagggg 29909397  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| | || ||||||||||||||| |||||||    
T  29909398 agtgactgctaatgttcagagctacagtatcatg 29909431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 28926839 - 28926709
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    ||||||| |||||||||||||| |||||||||||||| |||| | | |||||||||||||||| ||| |    ||||||||| | |||| ||||  ||||    
T  28926839 aacctaacgttgttacttatagctctttaatggatggatattgccttgttaaagaagtgaacaaggctaagagtatattcaacaatatggctcagggggg 28926740  T
Q  162 aatgattcctgatgttcagagctacactatc 192  Q
    | ||| ||||||| ||||||| |||| ||||    
T  28926739 agtgaatcctgatattcagagttacaatatc 28926709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 29099050 - 29099183
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    |||||||| ||||||||||||  |||||||||||||| |||| | | |||||||||||||| | ||| |    ||||||||| |||||| ||||  ||||    
T  29099050 aacctaattttgttacttataactctttaatggatggatattgcctagttaaagaagtgaataaggctaagagtatattcaacactatggctcagggggg 29099149  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| ||||||| ||||||| |||| |||||||    
T  29099150 agtgaatcctgatattcagagttacagtatcatg 29099183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 29115968 - 29116101
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    |||||||| ||||||||||||  |||||||||||||| |||| | | |||||||||||||| | ||| |    ||||||||| |||||| ||||  ||||    
T  29115968 aacctaattttgttacttataactctttaatggatggatattgcctagttaaagaagtgaataaggctaagagtatattcaacactatggctcagggggg 29116067  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| ||||||| ||||||| |||| |||||||    
T  29116068 agtgaatcctgatattcagagttacagtatcatg 29116101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 30028839 - 30028887
Alignment:
Q  58 gagttgaacctaatgttgttacttatagttctttaatggatggttattt 106  Q
    ||||| ||| ||||||||||||||||||||||||||||||||| |||||    
T  30028839 gagttaaacttaatgttgttacttatagttctttaatggatgggtattt 30028887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 29073470 - 29073603
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    |||||||||||||||||||| | |||||||||||||| |||| | | |||||| ||||||| | ||| |    ||||||||| |||||| ||||  ||||    
T  29073470 aacctaatgttgttacttattgctctttaatggatggatattgcctagttaaacaagtgaataaggctaatagtatattcaacactatggctcagggggg 29073569  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| |||||||  |||||| |||| |||||||    
T  29073570 agtgaatcctgatactcagagttacaatatcatg 29073603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 29106043 - 29106176
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    |||||||||||||||||||| | |||||||||||||| |||| | | |||||| ||||||| | ||| |    ||||||||| |||||| ||||  ||||    
T  29106043 aacctaatgttgttacttattgctctttaatggatggatattgcctagttaaacaagtgaataaggctaatagtatattcaacactatggctcagggggg 29106142  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| |||||||  |||||| |||| |||||||    
T  29106143 agtgaatcctgatactcagagttacaatatcatg 29106176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 29348890 - 29348757
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    ||||| |||||||||||||| | |||||||||||||| |||| | | |||||| ||||||| | ||| |    ||||||||| |||||| ||||  ||||    
T  29348890 aacctgatgttgttacttattgctctttaatggatggatattgcctagttaaacaagtgaataaggctaagagtatattcaacactatggctcagggggg 29348791  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| | || ||||||||||||||| |||||||    
T  29348790 agtgactgctaatgttcagagctacaatatcatg 29348757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 31000223 - 31000162
Alignment:
Q  71 tgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca 132  Q
    ||||||||||||||| |||||||||||||| ||||  ||| |||| |||||||||| |||||    
T  31000223 tgttgttacttatagctctttaatggatggatattgtttgattaacgaagtgaacaaggcca 31000162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 29887006 - 29887066
Alignment:
Q  66 cctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaaca 126  Q
    ||||||| |||||||||||| |||||||||||||| |||| | | ||||| ||||||||||    
T  29887006 cctaatgctgttacttatagctctttaatggatggatattgcctagttaatgaagtgaaca 29887066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 29894260 - 29894320
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||||||||||||||| ||| | |||||||||||||| |||| | | ||||||||||||||    
T  29894260 aacctaatgttgttacctattgctctttaatggatggatattgcctagttaaagaagtgaa 29894320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 29897784 - 29897844
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    ||||||||||| |||||||||  |||||||||||||| |||| | | ||||||||||||||    
T  29897784 aacctaatgtttttacttataactctttaatggatggatattgcctagttaaagaagtgaa 29897844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 29084726 - 29084785
Alignment:
Q  65 acctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||| |||||||||||||||  |||||||||||||| |||| | | ||||||||||||||    
T  29084726 acctgatgttgttacttataactctttaatggatggatattgcctagttaaagaagtgaa 29084785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 24730568 - 24730630
Alignment:
Q  70 atgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca 132  Q
    |||||||||||||||  |||||||||||||| |||| ||| ||||||||| | |||| |||||    
T  24730568 atgttgttacttataactctttaatggatggatattgcttagttaaagaaattaacaaggcca 24730630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 24886813 - 24886725
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatg 150  Q
    |||||| |||||| |||||||   |||||||| |||| |||| ||| ||||||||| ||||||||||||   |||||||||| ||||||    
T  24886813 aacctagtgttgtcacttataacactttaatgaatggatattgcttagttaaagaaatgaacatggccaaggatatattcaacactatg 24886725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 29358263 - 29358211
Alignment:
Q  72 gttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||||||||||||  |||||||||||||| |||||| | |||||| |||||||    
T  29358263 gttgttacttataactctttaatggatggatatttcctagttaaacaagtgaa 29358211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 29834922 - 29834982
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||| |||||||||||||||||  ||||||||||||| |||| | | |||||| |||||||    
T  29834922 aacccaatgttgttacttatagcgctttaatggatggatattgcctagttaaaaaagtgaa 29834982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 29866356 - 29866416
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||| |||||||||||||||||  ||||||||||||| |||| | | |||||| |||||||    
T  29866356 aacccaatgttgttacttatagcgctttaatggatggatattgcctagttaaaaaagtgaa 29866416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 29889231 - 29889287
Alignment:
Q  68 taatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||||||||||||||||  |||||||||||||| |||| | | |||||| |||||||    
T  29889231 taatgttgttacttataactctttaatggatggatattgcctagttaaacaagtgaa 29889287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 29905346 - 29905406
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaa 124  Q
    |||||||  ||||||||||||  |||||||||||||| |||| |||  |||||||||||||    
T  29905346 aacctaactttgttacttataactctttaatggatggatattgcttacttaaagaagtgaa 29905406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 44215 - 44036
Alignment:
Q  11 gagagatgaaaaaagttagaaatgcgttggctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttctt 109  Q
    ||||| ||||||||| |||||||| ||||||||| |||||||||||||  || ||||| ||| ||| |||||||||||||||||||||||| | |||||     
T  44215 gagaggtgaaaaaagctagaaatgtgttggctgttatgataaaacaaggcgtggaacccaatattgctacttatagttctttaatggatgggtgtttctc 44116  T
Q  110 ggttaaagaagtgaacatggccacata--tattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    ||||||||||||||||| |||||||||  ||||||| |||||  ||  ||||||| ||  || |||||||||||||||||    
T  44115 ggttaaagaagtgaacaaggccacatatgtattcaacactattgctagaaggggagtggctcttgatgttcagagctaca 44036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 24226481 - 24226652
Alignment:
Q  19 aaaaaagttagaaatgcgttggctgtaatgataaaacaa-gagttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaag 117  Q
    ||||||| |||||||| ||||||| | |||||||||||| | || ||||||||| |||||||||||| |||||| |||||||| ||||||||||||||||    
T  24226481 aaaaaagctagaaatgtgttggctattatgataaaacaacgtgtggaacctaatattgttacttataattctttgatggatgggtatttcttggttaaag 24226580  T
Q  118 aagtgaacatggcc--acatatattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    |||| |||| ||||  |||  ||||||| |||||  ||| ||||||||||| |||| ||||||  |||||||    
T  24226581 aagtcaacaaggccaaacagttattcaacactatttctctaaggggaatgactcctaatgttcgtagctaca 24226652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 9628608 - 9628562
Alignment:
Q  69 aatgttgttacttatagttctttaatggatggttatttcttggttaa 115  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||    
T  9628608 aatgttgttacttatggtgctttaatggatggttatttcttagttaa 9628562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 187
Target Start/End: Complemental strand, 44262923 - 44262760
Alignment:
Q  27 tagaaatgcgttggctgtaatgataaaacaaga-gttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaac 125  Q
    |||||||| ||| ||||| |||||||||||||  || || ||| || || ||||||||| |||||| |||||||| ||||||||||||||||||||||||    
T  44262923 tagaaatgtgttagctgttatgataaaacaaggtgtggatcctgatatttttacttatatttctttgatggatgggtatttcttggttaaagaagtgaac 44262824  T
Q  126 atggccacata--tattcaaaactatgcctcaaaggggaatgattcctgatgttcagagctaca 187  Q
    | |||||||||  ||||||| |||||  ||| ||| ||| ||||||||  |||||| |||||||    
T  44262823 aaggccacatatgtattcaacactattgctcgaagtggagtgattcctagtgttcaaagctaca 44262760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 3844 - 3974
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    ||||||| |||||||||||||| |||||||||||||| |||| | | |||||||||||||||| ||| |    ||||||||| | |||| ||||  ||||    
T  3844 aacctaacgttgttacttatagctctttaatggatggatattgccttgttaaagaagtgaacaaggctaagagtatattcaacaatatggctcagggggg 3943  T
Q  162 aatgattcctgatgttcagagctacactatc 192  Q
    | ||| ||||||| ||||||| |||| ||||    
T  3944 agtgaatcctgatattcagagttacaatatc 3974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 20888445 - 20888515
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggccacatat 137  Q
    |||||||||||||||||||||||||||||||   ||| ||||||||||||||||| |||| ||  |||||||||    
T  20888445 aacctaatgttgttacttatagttctttaat---tgggtatttcttggttaaagatgtgaccaaagccacatat 20888515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 53888 - 53755
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca--catatattcaaaactatgcctcaaagggg 161  Q
    |||||||||||||||||||| | |||||||||||||| |||| | | |||||| ||||||| | ||| |   | |||||||| |||||| |||| |||||    
T  53888 aacctaatgttgttacttattgctctttaatggatggatattgcctagttaaacaagtgaataaggctaagaagatattcaacactatgtctcagagggg 53789  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
    | ||| | || ||||||| ||||||| |||||||    
T  53788 agtgactgctaatgttcatagctacaatatcatg 53755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 19489953 - 19490090
Alignment:
Q  60 gttgaacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggccaca--tatattcaaaactatgcctcaaa 157  Q
    |||||||| ||  ||||||||||||||  ||| |||||||| |||| | | ||||| |||||||||| ||| | |  |||||||||  |||||   ||||    
T  19489953 gttgaaccgaacattgttacttatagtgttttgatggatgggtattgcctagttaatgaagtgaacaaggcgaaagatatattcaattctatgatgcaaa 19490052  T
Q  158 ggggaatgattcctgatgttcagagctacactatcatg 195  Q
    ||||||||| ||||||| |||||||||| |||||||||    
T  19490053 ggggaatgactcctgatattcagagctatactatcatg 19490090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 22050 - 22183
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcc-aca-tatattcaaaactatgcctcaaagggg 161  Q
    ||||| ||||||||||||| || |||||||||||||| ||||   |||| || |||||||||| |||| | | ||||||||| |||||| |||| |||||    
T  22050 aacctgatgttgttacttacagctctttaatggatggatattgtctggtaaatgaagtgaacaaggccgagagtatattcaacactatgtctcatagggg 22149  T
Q  162 aatgattcctgatgttcagagctacactatcatg 195  Q
      ||| | || ||||||||||||||| |||||||    
T  22150 tgtgactgctaatgttcagagctacaatatcatg 22183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 15063162 - 15063100
Alignment:
Q  70 atgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaacatggcca 132  Q
    |||||||||||||||  |||||||||||||| |||| ||| |||||| ||||||||| |||||    
T  15063162 atgttgttacttataactctttaatggatggatattgcttagttaaacaagtgaacaaggcca 15063100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 32760513 - 32760457
Alignment:
Q  70 atgttgttacttatagttctttaatggatggttatttcttggttaaagaagtgaaca 126  Q
    ||||||| | ||||| |||||| | |||||| |||||||||||||| ||||||||||    
T  32760513 atgttgtcatttataattctttgacggatgggtatttcttggttaaggaagtgaaca 32760457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 38145012 - 38144976
Alignment:
Q  64 aacctaatgttgttacttatagttctttaatggatgg 100  Q
    |||||||||||||||| |||||| |||||||||||||    
T  38145012 aacctaatgttgttacatatagtgctttaatggatgg 38144976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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