View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4661_low_4 (Length: 459)

Name: NF4661_low_4
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4661_low_4
NF4661_low_4
[»] chr8 (3 HSPs)
chr8 (50-449)||(1379710-1380109)
chr8 (105-396)||(17130030-17130321)
chr8 (105-137)||(41771398-41771430)
[»] chr4 (3 HSPs)
chr4 (100-449)||(17322984-17323333)
chr4 (18-78)||(17323330-17323391)
chr4 (105-137)||(35598752-35598784)
[»] chr3 (3 HSPs)
chr3 (103-383)||(34584680-34584960)
chr3 (270-380)||(23541501-23541611)
chr3 (103-185)||(44478272-44478354)
[»] chr1 (2 HSPs)
chr1 (103-383)||(30964566-30964846)
chr1 (205-311)||(26268454-26268560)
[»] chr7 (4 HSPs)
chr7 (105-396)||(37875432-37875723)
chr7 (204-326)||(14798954-14799076)
chr7 (204-326)||(15245946-15246068)
chr7 (104-137)||(47735291-47735324)
[»] chr2 (2 HSPs)
chr2 (105-396)||(20653454-20653745)
chr2 (104-137)||(13649870-13649903)
[»] chr5 (1 HSPs)
chr5 (103-185)||(21975824-21975906)


Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 50 - 449
Target Start/End: Original strand, 1379710 - 1380109
Alignment:
Q  50 atataatagaaagttataacaaatcaattaatgatgacaaagagtaactaaattttaccttttgttgatctgaaataaagacccatctcttctcaatacc 149  Q
    ||||||||||||  |||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1379710 atataatagaaatatataacaaattaattaaaattgacaaagagtaactaaattttaccttttgttgatctgaaataaagacccatctcttctcagtacc 1379809  T
Q  150 aaaatcatcaattaacaaggtcaaaaaccatctccatgattctttgttctcaacttcaacaatgccaaaagcaagaggataatattggtcattagcatct 249  Q
    || |||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1379810 aatatcatcaagtaacagggtcaaaaaccacctccatgattctttgttctcaacttcaacaatgccaaacgcaagaggataatattggtcattagcatct 1379909  T
Q  250 ctgcctactgctatcaacaattgaccaccatactgtgtcttcaagtgacatccatccacacctatgaaaggtctacaaccattcaagaacccttgcttac 349  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1379910 ctgcctactgctatcaacaattgaccaccatattgtgtcttcaagtgacatccatccacacctatgaagggtctacaaccattcaagaacccttgcttac 1380009  T
Q  350 agccttcaaaacaaaaatagaaagatccaaatctaggctgaagtgttagtcccactctttcaacatttattttcactgtgtttttctctaaagccctatg 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |||| |||||    
T  1380010 agccttcaaaacaaaaatagaaagatccaaatctaggctgaagtgttggtccaactctttcaacatttattttcactgtgttcttctctgaagctctatg 1380109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 105 - 396
Target Start/End: Original strand, 17130030 - 17130321
Alignment:
Q  105 taccttttgttgatctgaaataaagacccatctcttctcaataccaaaatcatcaattaacaaggtcaaaaaccatctccatgattctttgttctcaact 204  Q
    ||||||||||||||| || || |||||||||||||| ||| | |||| ||| |||| ||| |  || | |||||||||||| ||||| || ||||| |||    
T  17130030 taccttttgttgatcagagatgaagacccatctcttatcagttccaatatcttcaagtaaaagtgttagaaaccatctccaagattccttattctccact 17130129  T
Q  205 tcaacaatgccaaaagcaagaggataatattggtcattagcatctctgcctactgctatcaacaattgaccaccatactgtgtcttcaagtgacatccat 304  Q
    ||||| |  |||||||| | ||| |||||||||||||| ||||| || || ||||||||||| | |  | |||||||||| |||||||||||||| ||||    
T  17130130 tcaactaccccaaaagctaaagggtaatattggtcatttgcatccctcccaactgctatcaaaagtataacaccatactgagtcttcaagtgacacccat 17130229  T
Q  305 ccacacctatgaaaggtctacaaccattcaagaacccttgcttacagccttcaaaacaaaaatagaaagatccaaatctaggctgaagtgtt 396  Q
    | || |||||||| ||||| || ||| | || |||||||| |||   ||||||||||| || || |||||||||||| | || |||||||||    
T  17130230 ctactcctatgaatggtctgcacccacttaaaaacccttgtttaagtccttcaaaacagaagtaaaaagatccaaatttgggttgaagtgtt 17130321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 41771398 - 41771430
Alignment:
Q  105 taccttttgttgatctgaaataaagacccatct 137  Q
    |||||||||||||||||||||||| ||||||||    
T  41771398 taccttttgttgatctgaaataaacacccatct 41771430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 100 - 449
Target Start/End: Complemental strand, 17323333 - 17322984
Alignment:
Q  100 aattttaccttttgttgatctgaaataaagacccatctcttctcaataccaaaatcatcaattaacaaggtcaaaaaccatctccatgattctttgttct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||| | |||||||||||||||||||    
T  17323333 aattttaccttttgttgatctgaaataaagacccatctcttctcagtaccaatatcatcaagtaacaaggtcaaaaactacctccatgattctttgttct 17323234  T
Q  200 caacttcaacaatgccaaaagcaagaggataatattggtcattagcatctctgcctactgctatcaacaattgaccaccatactgtgtcttcaagtgaca 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17323233 caacttcaacaatgccaaaagcaagaggataatattggtcattagcatctctgcctactgctatcaacaattgaccaccatattgtgtcttcaagtgaca 17323134  T
Q  300 tccatccacacctatgaaaggtctacaaccattcaagaacccttgcttacagccttcaaaacaaaaatagaaagatccaaatctaggctgaagtgttagt 399  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17323133 tccatccacacctatgaaaggtctacaaccattcaagaaccctttcctacatccttcaaaacaaaaatagaaagatccaaatctaggctgaagtgttggt 17323034  T
Q  400 cccactctttcaacatttattttcactgtgtttttctctaaagccctatg 449  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17323033 cccactctttcaacatttattttcactgtgtttttctctgaagccctatg 17322984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 17323391 - 17323330
Alignment:
Q  18 cagtaggcatataatataaagttatagaaa-gcatataatagaaagttataacaaatcaatt 78  Q
    ||||| |||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  17323391 cagtaagcatataatagaaagttataaaaaagcatataatagaaagttataacaaatcaatt 17323330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 35598784 - 35598752
Alignment:
Q  105 taccttttgttgatctgaaataaagacccatct 137  Q
    |||||||||||||||||||||||| ||||||||    
T  35598784 taccttttgttgatctgaaataaacacccatct 35598752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 9e-74; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 103 - 383
Target Start/End: Complemental strand, 34584960 - 34584680
Alignment:
Q  103 tttaccttttgttgatctgaaataaagacccatctcttctcaataccaaaatcatcaattaacaaggtcaaaaaccatctccatgattctttgttctcaa 202  Q
    ||||||||||||||||| || ||||| ||||||||||||||| | |||| ||| || | ||| |  || |||||||| |||||||||||  | |||||||    
T  34584960 tttaccttttgttgatcagatataaatacccatctcttctcagttccaatatcctctagtaaaagagttaaaaaccacctccatgattcagtattctcaa 34584861  T
Q  203 cttcaacaatgccaaaagcaagaggataatattggtcattagcatctctgcctactgctatcaacaattgaccaccatactgtgtcttcaagtgacatcc 302  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||  | ||| || ||||| ||||| ||||| ||||||||    
T  34584860 cttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacatcc 34584761  T
Q  303 atccacacctatgaaaggtctacaaccattcaagaacccttgcttacagccttcaaaacaaaaatagaaagatccaaatct 383  Q
    ||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||    
T  34584760 atctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaaagatccaaatct 34584680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 380
Target Start/End: Complemental strand, 23541611 - 23541501
Alignment:
Q  270 ttgaccaccatactgtgtcttcaagtgacatccatccacacctatgaaaggtctacaaccattcaagaacccttgcttacagccttcaaaacaaaaatag 369  Q
    |||||| ||||||| |||||| || ||||||||||| || || |  || |||||||| ||||| | ||| |||| ||||||||| ||||||||||| |||    
T  23541611 ttgacccccatactttgtctttaaatgacatccatctaccccaacaaatggtctacacccattgatgaaacctttcttacagccatcaaaacaaaagtag 23541512  T
Q  370 aaagatccaaa 380  Q
    ||||| |||||    
T  23541511 aaagaaccaaa 23541501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 44478354 - 44478272
Alignment:
Q  103 tttaccttttgttgatctgaaataaagacccatctcttctcaataccaaaatcatcaattaacaaggtcaaaaaccatctcca 185  Q
    |||||||||||||| ||||  ||||||||||||||| | ||| | |||| ||||| || || ||| ||||| |||||||||||    
T  44478354 tttaccttttgttggtctgttataaagacccatctcctgtcagtgccaatatcattaagtagcaatgtcaagaaccatctcca 44478272  T

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Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 103 - 383
Target Start/End: Complemental strand, 30964846 - 30964566
Alignment:
Q  103 tttaccttttgttgatctgaaataaagacccatctcttctcaataccaaaatcatcaattaacaaggtcaaaaaccatctccatgattctttgttctcaa 202  Q
    ||||| ||||||||||| || ||||| ||||||||||||||| | |||| ||| || | ||| |  || |||||||| |||||||||||  | |||||||    
T  30964846 tttactttttgttgatcagatataaatacccatctcttctcatttccaatatcctctagtaaaagagttaaaaaccacctccatgattcagtattctcaa 30964747  T
Q  203 cttcaacaatgccaaaagcaagaggataatattggtcattagcatctctgcctactgctatcaacaattgaccaccatactgtgtcttcaagtgacatcc 302  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||  | ||| || ||||| ||||| ||||| ||||||||    
T  30964746 cttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacatcc 30964647  T
Q  303 atccacacctatgaaaggtctacaaccattcaagaacccttgcttacagccttcaaaacaaaaatagaaagatccaaatct 383  Q
    ||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||    
T  30964646 atctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaaagatccaaatct 30964566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 311
Target Start/End: Complemental strand, 26268560 - 26268454
Alignment:
Q  205 tcaacaatgccaaaagcaagaggataatattggtcattagcatctctgcctactgctatcaacaattgaccaccatactgtgtcttcaagtgacatccat 304  Q
    |||||||  |||||||| | |||| | ||||| ||||| | |||||| ||||| || | |||||||||||| ||||| | |||||||| |||||| ||||    
T  26268560 tcaacaacaccaaaagctaaaggaaagtattgatcatttggatctctccctacagccaccaacaattgacctccatattttgtcttcaggtgacacccat 26268461  T
Q  305 ccacacc 311  Q
    | |||||    
T  26268460 caacacc 26268454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 8e-59; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 105 - 396
Target Start/End: Complemental strand, 37875723 - 37875432
Alignment:
Q  105 taccttttgttgatctgaaataaagacccatctcttctcaataccaaaatcatcaattaacaaggtcaaaaaccatctccatgattctttgttctcaact 204  Q
    ||||||||||||||||||||| || |||||| || ||||| | || | ||| |||| |||||  || || |||||||||||   |||||||||||| |||    
T  37875723 taccttttgttgatctgaaatgaaaacccatttcctctcagtccctatatcttcaagtaacagtgttaagaaccatctccagctttctttgttctccact 37875624  T
Q  205 tcaacaatgccaaaagcaagaggataatattggtcattagcatctctgcctactgctatcaacaattgaccaccatactgtgtcttcaagtgacatccat 304  Q
    |||||||| ||||| || | |||||||||||| |||||||||||||| || || |||||||| |||||||||||||| |||||||||| |||||| ||||    
T  37875623 tcaacaataccaaaggccaaaggataatattgatcattagcatctcttccaacagctatcaataattgaccaccatattgtgtcttcaggtgacacccat 37875524  T
Q  305 ccacacctatgaaaggtctacaaccattcaagaacccttgcttacagccttcaaaacaaaaatagaaagatccaaatctaggctgaagtgtt 396  Q
    | ||||| ||||| |||||||| ||| ||||||||||| | ||  |||||||||| || |||||||| || |||||||| ||||||||||||    
T  37875523 caacaccaatgaatggtctacatccagtcaagaaccctagtttcaagccttcaaagcagaaatagaatgaaccaaatcttggctgaagtgtt 37875432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 14798954 - 14799076
Alignment:
Q  204 ttcaacaatgccaaaagcaagaggataatattggtcattagcatctctgcctactgctatcaacaattgaccaccatactgtgtcttcaagtgacatcca 303  Q
    ||||||||  |||||||| | |||| | ||||| ||||| | |||||| ||||| || | |||||||||||| ||||| | |||||||| |||||| |||    
T  14798954 ttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacaccca 14799053  T
Q  304 tccacacctatgaaaggtctaca 326  Q
    || ||||| || || ||||||||    
T  14799054 tcaacaccaataaatggtctaca 14799076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 15245946 - 15246068
Alignment:
Q  204 ttcaacaatgccaaaagcaagaggataatattggtcattagcatctctgcctactgctatcaacaattgaccaccatactgtgtcttcaagtgacatcca 303  Q
    ||||||||  |||||||| | |||| | ||||| ||||| | |||||| ||||| || | |||||||||||| ||||| | |||||||| |||||| |||    
T  15245946 ttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacaccca 15246045  T
Q  304 tccacacctatgaaaggtctaca 326  Q
    || ||||| || || ||||||||    
T  15246046 tcaacaccaataaatggtctaca 15246068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 47735324 - 47735291
Alignment:
Q  104 ttaccttttgttgatctgaaataaagacccatct 137  Q
    ||||||||||||||||||||||||| ||||||||    
T  47735324 ttaccttttgttgatctgaaataaacacccatct 47735291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 105 - 396
Target Start/End: Complemental strand, 20653745 - 20653454
Alignment:
Q  105 taccttttgttgatctgaaataaagacccatctcttctcaataccaaaatcatcaattaacaaggtcaaaaaccatctccatgattctttgttctcaact 204  Q
    ||||||||||||||| || || |||||||||||||| |||   |||| ||| |||| |||||  |||| |||||||||||| ||||| || ||||| |||    
T  20653745 taccttttgttgatcagagatgaagacccatctcttatcagctccaatatcttcaagtaacagtgtcagaaaccatctccaagattccttattctccact 20653646  T
Q  205 tcaacaatgccaaaagcaagaggataatattggtcattagcatctctgcctactgctatcaacaattgaccaccatactgtgtcttcaagtgacatccat 304  Q
    |||||||  |||||||| | ||| |||||||||||||| ||||| || || ||||||||||| |  | ||||||||| || |||||||||||||| ||||    
T  20653645 tcaacaaccccaaaagctaaagggtaatattggtcatttgcatccctaccaactgctatcaaaagcttaccaccatattgagtcttcaagtgacacccat 20653546  T
Q  305 ccacacctatgaaaggtctacaaccattcaagaacccttgcttacagccttcaaaacaaaaatagaaagatccaaatctaggctgaagtgtt 396  Q
    | |   ||||||| ||||| || ||| | || |||||||| |||   ||||||||||| || || || ||| ||||||| || |||| ||||    
T  20653545 ctatttctatgaatggtctgcacccacttaaaaacccttgtttaagtccttcaaaacagaagtaaaatgattcaaatcttggttgaattgtt 20653454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 13649870 - 13649903
Alignment:
Q  104 ttaccttttgttgatctgaaataaagacccatct 137  Q
    ||||||||||||||||||||||||| ||||||||    
T  13649870 ttaccttttgttgatctgaaataaacacccatct 13649903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 21975824 - 21975906
Alignment:
Q  103 tttaccttttgttgatctgaaataaagacccatctcttctcaataccaaaatcatcaattaacaaggtcaaaaaccatctcca 185  Q
    |||||||||||||| ||||  ||||||||||||||| | ||| | |||| ||||| || || ||| ||||| |||||||||||    
T  21975824 tttaccttttgttggtctgttataaagacccatctcctgtcagtgccaatatcattaagtagcaatgtcaagaaccatctcca 21975906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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