View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4661_low_5 (Length: 451)

Name: NF4661_low_5
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4661_low_5
NF4661_low_5
[»] chr4 (16 HSPs)
chr4 (18-445)||(4925884-4926319)
chr4 (286-445)||(6794666-6794821)
chr4 (286-425)||(6649297-6649432)
chr4 (286-445)||(6813996-6814151)
chr4 (286-374)||(6535242-6535330)
chr4 (286-365)||(6834466-6834545)
chr4 (286-445)||(6589627-6589782)
chr4 (286-363)||(6624019-6624096)
chr4 (286-445)||(6726152-6726307)
chr4 (389-445)||(8413042-8413098)
chr4 (389-440)||(6834395-6834446)
chr4 (286-367)||(6499937-6500019)
chr4 (286-367)||(6547493-6547574)
chr4 (286-363)||(6751147-6751224)
chr4 (389-445)||(6751069-6751125)
chr4 (286-326)||(6771543-6771583)
[»] scaffold0373 (1 HSPs)
scaffold0373 (290-445)||(11486-11637)


Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 4926319 - 4925884
Alignment:
Q  18 gtcttatcctcctcttgtaaatagccaattacaatctcttttttcagttatacaaatgc-tatgctgccatcaaaatagaggggaataattttcttcaat 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  4926319 gtcttatcctcctcttgtaaatagccaataacaatctcttttttcagttatacaaatgcatatgctgccatcaaaatagaagggaataattttcttcaat 4926220  T
Q  117 cttcccactgcacagtttcttcattagagaatatacatacac-------ctttgacaacataataccaattttattctatacaacataataatctctaaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4926219 cttcccactgcacagtttcttcattagagaatatacatacacgatacacctttgacaacataataccaattttattctatacaacataataatctctaaa 4926120  T
Q  210 acaaaagcacctttggcatatgtttctttgaaacatgcatttaagatatgtatatggcaaatctcatagtgtagcaaaataggacccaagtactttaact 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4926119 acaaaagcacctttggcatatgtttctttgaaacatgcatttaagatatgtatatggcaaatctcatagtgtagcaaaataggacccaagtactttaact 4926020  T
Q  310 gctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcggtactggtcgattaattgaatgcatgccaacagaaa 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  4926019 gctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttctatcggtactggtcgattaattgaatgcatgccaacagaga 4925920  T
Q  410 agcttaatagattcacctttgtccatttcttctatt 445  Q
    |||||||||||||||| |||||||||||||||||||    
T  4925919 agcttaatagattcacttttgtccatttcttctatt 4925884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 445
Target Start/End: Complemental strand, 6794821 - 6794666
Alignment:
Q  286 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcggtactggtcgat 385  Q
    |||||||| |||||||||| || ||||||||||||||||||  | ||| ||| ||| | |||||||||| ||||||||| || ||| ||   |||| | |    
T  6794821 aaataggaaccaagtacttcaagtgctagtggcaatctccctgagtaagcaatcacatctgttgaatgtttagcaaaatattctattggacttggttgct 6794722  T
Q  386 taattgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 445  Q
    |    |||||||||||||| ||||||||||| |||||||| ||  |||||||||||||||    
T  6794721 t----gaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctatt 6794666  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 425
Target Start/End: Complemental strand, 6649432 - 6649297
Alignment:
Q  286 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcggtactggtcgat 385  Q
    |||||||| ||||| |||| || |||||| |||||||||||| | ||| ||| ||| | ||||||||||||||||||||||||| | ||   |||    |    
T  6649432 aaataggaaccaaggacttgaagtgctagaggcaatctcccagaataagcaatcacatctgttgaatgtgtagcaaaatcttttgtaggacttgg----t 6649337  T
Q  386 taattgaatgcatgccaacagaaaagcttaatagattcac 425  Q
    | ||||||||||||||||| |||||||| || ||||||||    
T  6649336 tgattgaatgcatgccaactgaaaagctcaagagattcac 6649297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 445
Target Start/End: Complemental strand, 6814151 - 6813996
Alignment:
Q  286 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcggtactggtcgat 385  Q
    ||||||||||| || |||| || |||||||||||||| |||| | |||  || ||| | |||| ||||| |||||||||||| ||||||   |||| | |    
T  6814151 aaataggacccgaggacttcaagtgctagtggcaatcccccagaataagaaatcacatctgttaaatgtttagcaaaatcttctatcggacttggttgct 6814052  T
Q  386 taattgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 445  Q
    |    |||||||||||||| ||||||||||| |||||||| ||  |||||||||||||||    
T  6814051 t----gaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctatt 6813996  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 374
Target Start/End: Original strand, 6535242 - 6535330
Alignment:
Q  286 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcgg 374  Q
    |||||||||||||| |||| || |||||| |||||||||||| | ||| ||| ||| |  |||||||||||||||||||||| ||||||    
T  6535242 aaataggacccaaggacttcaagtgctaggggcaatctcccagaataagcaatcacatccgttgaatgtgtagcaaaatcttctatcgg 6535330  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 6834545 - 6834466
Alignment:
Q  286 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatc 365  Q
    |||||||| ||||| |||| || ||||||||||||||| ||| | ||| ||| ||| | |||||||||||||||||||||    
T  6834545 aaataggagccaaggacttcaagtgctagtggcaatcttccagaataagcaatcacatctgttgaatgtgtagcaaaatc 6834466  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 445
Target Start/End: Original strand, 6589627 - 6589782
Alignment:
Q  286 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcggtactggtcgat 385  Q
    |||||||| ||||| |||| || |||||||||||||| |||| | ||| ||| ||| | ||||||||| ||||||||||||| | | ||   |||    |    
T  6589627 aaataggatccaaggacttcaagtgctagtggcaatcccccagaataagcaatcacatctgttgaatgcgtagcaaaatcttcttttggacttgg----t 6589722  T
Q  386 taattgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 445  Q
    |  ||||||||||||||||  || |||||||  ||||||  |||||||||||||||||||    
T  6589723 tgtttgaatgcatgccaactaaacagcttaagtgattcaattttgtccatttcttctatt 6589782  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 363
Target Start/End: Original strand, 6624019 - 6624096
Alignment:
Q  286 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaa 363  Q
    |||||| ||||||| |||| || ||||||||||||||||||  | ||| ||| ||| | |||||||||||||||||||    
T  6624019 aaatagcacccaagaacttcaagtgctagtggcaatctcccggaataagcaatcacatctgttgaatgtgtagcaaaa 6624096  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 445
Target Start/End: Complemental strand, 6726307 - 6726152
Alignment:
Q  286 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcggtactggtcgat 385  Q
    ||||| |||||||  |||| || |||||||||||||| |||| | ||  ||| ||| | |||||||||| |||||||||||| | | || ||| |   ||    
T  6726307 aaatatgacccaatgacttcaagtgctagtggcaatcccccagaatatgcaatcacatctgttgaatgtttagcaaaatcttcttttgg-acttg---at 6726212  T
Q  386 taattgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 445  Q
    |  |||||||||||||||| ||||||||| | |||||||| ||  |||||||||||||||    
T  6726211 tgcttgaatgcatgccaactgaaaagcttgagagattcactttcatccatttcttctatt 6726152  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 445
Target Start/End: Complemental strand, 8413098 - 8413042
Alignment:
Q  389 ttgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 445  Q
    |||||||||||||||| ||||||||| | |||||||| || ||||||||||| ||||    
T  8413098 ttgaatgcatgccaactgaaaagcttgagagattcactttcgtccatttcttttatt 8413042  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 440
Target Start/End: Complemental strand, 6834446 - 6834395
Alignment:
Q  389 ttgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttctt 440  Q
    |||||||||||||||| |||||||| || |||||||| || |||||||||||    
T  6834446 ttgaatgcatgccaactgaaaagctcaagagattcactttcgtccatttctt 6834395  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 367
Target Start/End: Original strand, 6499937 - 6500019
Alignment:
Q  286 aaataggacccaagtactttaactgctagtggc-aatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatctt 367  Q
    |||||||||||||| |||| || |||||||||| |||| |||| | |||  |||||| | | |||||||||||||||||||||    
T  6499937 aaataggacccaagaacttcaagtgctagtggcaaatcccccagaataagaaaccacatcttttgaatgtgtagcaaaatctt 6500019  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 367
Target Start/End: Original strand, 6547493 - 6547574
Alignment:
Q  286 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatctt 367  Q
    |||||||| ||||| |||| || ||||||||| ||||| ||| | ||| |||||| || |||  ||||||||||||||||||    
T  6547493 aaataggagccaaggacttcaagtgctagtggaaatcttccagaataagcaaccatgtctgtcaaatgtgtagcaaaatctt 6547574  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 363
Target Start/End: Complemental strand, 6751224 - 6751147
Alignment:
Q  286 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaa 363  Q
    ||||||||||| || |||| || ||||||||| ||||||||| | ||| ||| ||| | | |||||||||||||||||    
T  6751224 aaataggacccgaggacttcaagtgctagtggtaatctcccagaataagcaatcacatcttttgaatgtgtagcaaaa 6751147  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 445
Target Start/End: Complemental strand, 6751125 - 6751069
Alignment:
Q  389 ttgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 445  Q
    |||||||||||||||| |||||||| || |||||||| || || |||||||| ||||    
T  6751125 ttgaatgcatgccaactgaaaagctcaagagattcactttcgttcatttcttttatt 6751069  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 326
Target Start/End: Complemental strand, 6771583 - 6771543
Alignment:
Q  286 aaataggacccaagtactttaactgctagtggcaatctccc 326  Q
    |||||||||||||| |||| || ||||||||||||||||||    
T  6771583 aaataggacccaagaacttcaagtgctagtggcaatctccc 6771543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 445
Target Start/End: Original strand, 11486 - 11637
Alignment:
Q  290 aggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcggtactggtcgattaat 389  Q
    |||| |||||||||| || ||||||||||||||||||  | ||| ||| ||| | |||||||||| ||||||||| || ||| ||   |||| | ||       
T  11486 aggaaccaagtacttcaagtgctagtggcaatctccctgagtaagcaatcacatctgttgaatgtttagcaaaatattctattggacttggttgctt--- 11582  T
Q  390 tgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 445  Q
     |||||||||||||| ||||||||||| |||||||| ||  |||||||||||||||    
T  11583 -gaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctatt 11637  T

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