View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4661_low_7 (Length: 432)
Name: NF4661_low_7
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 32 - 423
Target Start/End: Original strand, 7857012 - 7857407
Alignment:
| Q |
32 |
tgtttgataaaattcccgagaaaagtttgagtcattggacttcgatgctttgtaggcta----ttataatgctaaaatgatacttcgttaagttgtggtt |
127 |
Q |
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| T |
7857012 |
tgtttgataaaattcccgagaaaagtttgagtcattggacttcgatgctttgtaggctaggcattataatgctaaaatgatacttcgttaagttgtggtt |
7857111 |
T |
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| Q |
128 |
taaaatttagccttgatatgtactttgtttctgttttttgtcatgatgtctaagtttaaggtttgcaatttcctctgttttccggtgttagtttatgcct |
227 |
Q |
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| T |
7857112 |
taaaatttagccttaatatgtactttgtttctgttttttgtcatgatgtctaagtttaaggtttgcaatttcctctgttttccggtgttagtttatgcct |
7857211 |
T |
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| Q |
228 |
ttttcgcctatcatattcatcagtcaactagttggatctgtgtagtggcaatatgttgtggttttgctctgattttgttttgcttattctggtttgtcta |
327 |
Q |
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| T |
7857212 |
ttttcgcctatcatattcatcagtcaactagttggatctgtgtagtggcaatatgttgtggttttgctctgattttgttttgcttattctggtttatcta |
7857311 |
T |
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| Q |
328 |
ctctgaggccctatatcggattttgttgcttgtttgctgcagctaaagtttgaggtaccggctgctgatgagaaacaagaactgctgaagaattat |
423 |
Q |
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| T |
7857312 |
ctctgaggccttatatcggattttgttgcttgtttgctgcagctaaagtttgaggtaccggctgctgatgagaaacaagaactgctgaagaattat |
7857407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 16625274 - 16625183
Alignment:
| Q |
90 |
attataatgctaaaatgatacttcgttaagttgtggtttaaaatttagcctt--gatatgtactttgtttctg-ttttttgtcatgatgtct |
178 |
Q |
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| T |
16625274 |
attataatgccataatgatacttcgtcaagttgtggtttaaaacttagctctaggatatgtactttgtttctgtttttttgtcatgatgtct |
16625183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 16623947 - 16623891
Alignment:
| Q |
178 |
taagtttaaggtttgcaatttcctctgttttccggtgttagtttatgcctttttcgc |
234 |
Q |
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| T |
16623947 |
taagattaaggtttgcaatttcctctgttttccagtattagttgatgcctttttcgc |
16623891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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