View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4661_low_9 (Length: 403)
Name: NF4661_low_9
Description: NF4661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4661_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 162 - 382
Target Start/End: Original strand, 46503935 - 46504155
Alignment:
| Q |
162 |
attggatttaacattagtcctaaacatagaaatggtggagcttttctcccattctcaaaagaaagaaataactcatcttgtcaaggtcagggtcttcctg |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46503935 |
attggatttaacattagtcctaaacatagaaatggtggagcttttctcccattctcaaaagaaagaaataactcatcttgtcaaggtcagggtcttcctg |
46504034 |
T |
|
| Q |
262 |
aactagcactagcttctactcaaaaagaagaggataagaaacatgttggagaagcagaaaaagggaaaacaaattcagggaatgaagctgataatcaagg |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46504035 |
aactagcactagcttctactcaaaaagaagaggataagaaacatgttggagaagcagaaaaagggaaaacaaattcagggaatgaagttgataatcaagg |
46504134 |
T |
|
| Q |
362 |
aaaaggaagtccagtagcatc |
382 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46504135 |
aaaaggaagtccagtagcatc |
46504155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 46503782 - 46503865
Alignment:
| Q |
9 |
acatcatcagaaacattggaaaagacaacaaataataatgtatgtgatatggcaaattggatgacaagtgcacaattatggagc |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46503782 |
acatcatcagaaacattggaaaagacaacaaataataatgtatgtgatatggcaaattggatgacaagtgcacaattatggagc |
46503865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University