View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4662-Insertion-1 (Length: 814)

Name: NF4662-Insertion-1
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4662-Insertion-1
NF4662-Insertion-1
[»] chr8 (25 HSPs)
chr8 (279-405)||(10661094-10661220)
chr8 (285-405)||(44672735-44672855)
chr8 (279-406)||(3006587-3006714)
chr8 (300-406)||(33068227-33068333)
chr8 (285-405)||(36910347-36910467)
chr8 (300-406)||(5803261-5803367)
chr8 (300-406)||(14549185-14549291)
chr8 (280-406)||(18170040-18170161)
chr8 (280-406)||(18633608-18633729)
chr8 (285-369)||(30392085-30392169)
chr8 (302-396)||(6200878-6200972)
chr8 (277-406)||(44336710-44336840)
chr8 (300-405)||(3681895-3681994)
chr8 (285-376)||(33565901-33565994)
chr8 (300-385)||(7428469-7428554)
chr8 (274-374)||(12883777-12883877)
chr8 (297-375)||(45366266-45366344)
chr8 (301-374)||(31497656-31497729)
chr8 (311-364)||(38926473-38926526)
chr8 (301-385)||(4785198-4785282)
chr8 (285-376)||(40436382-40436474)
chr8 (320-375)||(8036024-8036079)
chr8 (302-385)||(24682126-24682209)
chr8 (300-369)||(15272358-15272427)
chr8 (300-369)||(15452727-15452796)
[»] chr2 (22 HSPs)
chr2 (285-405)||(44979785-44979905)
chr2 (285-402)||(25298270-25298387)
chr2 (285-406)||(36413655-36413776)
chr2 (278-405)||(9811330-9811457)
chr2 (300-405)||(44035267-44035373)
chr2 (304-405)||(11375867-11375968)
chr2 (300-406)||(16578597-16578703)
chr2 (279-407)||(19937139-19937266)
chr2 (285-406)||(42785644-42785765)
chr2 (279-400)||(17916872-17916993)
chr2 (301-405)||(18356866-18356970)
chr2 (285-402)||(15320598-15320715)
chr2 (285-349)||(34910257-34910321)
chr2 (279-385)||(41461022-41461128)
chr2 (297-385)||(27301520-27301608)
chr2 (279-385)||(12041625-12041731)
chr2 (300-385)||(17762703-17762788)
chr2 (278-406)||(5862646-5862774)
chr2 (278-405)||(1330949-1331076)
chr2 (300-406)||(28790467-28790573)
chr2 (300-376)||(44085450-44085527)
chr2 (285-369)||(12841492-12841576)
[»] chr3 (27 HSPs)
chr3 (285-405)||(6004403-6004523)
chr3 (286-406)||(4669662-4669782)
chr3 (297-405)||(21586859-21586967)
chr3 (286-405)||(32880248-32880367)
chr3 (285-405)||(34794541-34794661)
chr3 (285-405)||(51149673-51149793)
chr3 (280-406)||(35402220-35402346)
chr3 (285-406)||(10369158-10369279)
chr3 (285-405)||(9827794-9827914)
chr3 (280-406)||(43030358-43030484)
chr3 (299-405)||(48032865-48032966)
chr3 (300-405)||(50562586-50562691)
chr3 (297-364)||(35532193-35532260)
chr3 (285-406)||(54121967-54122088)
chr3 (300-400)||(39097907-39098010)
chr3 (286-385)||(55467678-55467777)
chr3 (353-406)||(33360968-33361021)
chr3 (300-385)||(17144766-17144850)
chr3 (300-374)||(2832446-2832520)
chr3 (285-359)||(37044867-37044941)
chr3 (287-385)||(20846418-20846518)
chr3 (280-385)||(26291992-26292097)
chr3 (301-385)||(26758186-26758270)
chr3 (300-376)||(42363270-42363346)
chr3 (303-385)||(22257535-22257617)
chr3 (297-385)||(10481681-10481769)
chr3 (278-376)||(38652034-38652131)
[»] chr7 (36 HSPs)
chr7 (300-406)||(13852270-13852376)
chr7 (291-405)||(47903200-47903314)
chr7 (285-405)||(27054748-27054868)
chr7 (277-406)||(47069607-47069736)
chr7 (278-406)||(47204472-47204600)
chr7 (285-406)||(10671767-10671888)
chr7 (279-405)||(11206374-11206500)
chr7 (285-406)||(3213237-3213358)
chr7 (300-405)||(7209285-7209390)
chr7 (285-406)||(12117546-12117667)
chr7 (280-402)||(8768982-8769104)
chr7 (287-402)||(5932644-5932759)
chr7 (287-406)||(10069142-10069261)
chr7 (302-405)||(31983012-31983115)
chr7 (308-406)||(43429145-43429243)
chr7 (300-401)||(32823566-32823666)
chr7 (305-400)||(31876651-31876746)
chr7 (297-406)||(1335277-1335385)
chr7 (301-401)||(18673210-18673310)
chr7 (289-405)||(24361510-24361625)
chr7 (311-406)||(2408981-2409076)
chr7 (300-406)||(48675073-48675179)
chr7 (285-406)||(32942094-32942215)
chr7 (285-353)||(45898128-45898196)
chr7 (300-405)||(36507908-36508013)
chr7 (300-359)||(7205940-7205999)
chr7 (286-385)||(8568590-8568689)
chr7 (300-386)||(8118316-8118401)
chr7 (300-406)||(7760066-7760167)
chr7 (300-385)||(26215160-26215245)
chr7 (297-401)||(11216113-11216217)
chr7 (281-385)||(16535779-16535883)
chr7 (281-385)||(16629779-16629883)
chr7 (304-376)||(48642745-48642817)
chr7 (285-376)||(4153772-4153863)
chr7 (320-365)||(23729369-23729414)
[»] scaffold0059 (1 HSPs)
scaffold0059 (285-406)||(69555-69676)
[»] chr4 (33 HSPs)
chr4 (285-406)||(40806833-40806954)
chr4 (285-406)||(40900098-40900219)
chr4 (285-406)||(50570973-50571094)
chr4 (279-406)||(29644140-29644267)
chr4 (300-405)||(5261980-5262085)
chr4 (285-406)||(29636720-29636841)
chr4 (279-406)||(42557665-42557792)
chr4 (285-406)||(32136639-32136760)
chr4 (285-405)||(36077519-36077639)
chr4 (300-405)||(48996046-48996151)
chr4 (279-406)||(10218619-10218746)
chr4 (286-405)||(43630525-43630644)
chr4 (285-406)||(6333263-6333379)
chr4 (285-406)||(51394665-51394781)
chr4 (279-371)||(31301236-31301328)
chr4 (310-405)||(23937534-23937629)
chr4 (279-405)||(30193991-30194118)
chr4 (285-405)||(52344684-52344799)
chr4 (285-375)||(48293451-48293541)
chr4 (300-397)||(13690872-13690969)
chr4 (279-376)||(5122429-5122526)
chr4 (285-406)||(23120272-23120393)
chr4 (286-405)||(23450000-23450119)
chr4 (278-406)||(36106434-36106563)
chr4 (289-406)||(48338292-48338408)
chr4 (278-346)||(41260212-41260280)
chr4 (285-376)||(20986368-20986459)
chr4 (285-402)||(45983330-45983447)
chr4 (311-405)||(8176613-8176702)
chr4 (285-359)||(32223381-32223455)
chr4 (308-406)||(51907037-51907130)
chr4 (297-385)||(18536680-18536768)
chr4 (320-372)||(54274066-54274118)
[»] chr6 (18 HSPs)
chr6 (285-400)||(35040231-35040346)
chr6 (280-406)||(10494396-10494522)
chr6 (300-405)||(10590812-10590917)
chr6 (285-406)||(5874167-5874288)
chr6 (279-404)||(15859666-15859791)
chr6 (278-405)||(12270496-12270623)
chr6 (300-406)||(13810884-13810990)
chr6 (278-405)||(5287920-5288047)
chr6 (300-406)||(25136733-25136839)
chr6 (300-406)||(33550281-33550387)
chr6 (300-405)||(10391037-10391143)
chr6 (337-406)||(13801997-13802066)
chr6 (59-112)||(28709966-28710019)
chr6 (333-376)||(30752525-30752568)
chr6 (285-374)||(892388-892477)
chr6 (297-374)||(9686016-9686093)
chr6 (286-402)||(6266851-6266967)
chr6 (297-385)||(22413796-22413884)
[»] chr1 (25 HSPs)
chr1 (280-406)||(16529515-16529641)
chr1 (285-405)||(1161758-1161878)
chr1 (285-401)||(51252435-51252551)
chr1 (280-406)||(20493690-20493816)
chr1 (300-406)||(32954000-32954105)
chr1 (285-406)||(8211225-8211346)
chr1 (285-406)||(5155358-5155479)
chr1 (289-406)||(29388983-29389100)
chr1 (300-406)||(39256651-39256757)
chr1 (301-405)||(33474410-33474514)
chr1 (288-406)||(45691746-45691865)
chr1 (300-406)||(33910796-33910903)
chr1 (300-406)||(44918509-44918610)
chr1 (286-406)||(11898958-11899073)
chr1 (301-385)||(36203479-36203563)
chr1 (285-401)||(42789628-42789739)
chr1 (302-376)||(32910414-32910488)
chr1 (280-385)||(21685578-21685683)
chr1 (280-385)||(35980423-35980528)
chr1 (285-411)||(27507501-27507627)
chr1 (285-385)||(2490064-2490164)
chr1 (285-376)||(8165596-8165687)
chr1 (278-385)||(40095457-40095564)
chr1 (280-377)||(12973501-12973598)
chr1 (297-385)||(34914092-34914180)
[»] scaffold0013 (2 HSPs)
scaffold0013 (285-406)||(128583-128704)
scaffold0013 (285-406)||(105976-106097)
[»] chr5 (32 HSPs)
chr5 (285-406)||(11917352-11917473)
chr5 (285-406)||(15068407-15068528)
chr5 (285-405)||(333293-333413)
chr5 (285-405)||(27886432-27886552)
chr5 (297-406)||(38433656-38433765)
chr5 (300-405)||(42544620-42544725)
chr5 (281-405)||(2226900-2227024)
chr5 (285-405)||(17085253-17085373)
chr5 (277-406)||(701158-701288)
chr5 (308-406)||(36177120-36177218)
chr5 (285-406)||(8408937-8409058)
chr5 (285-405)||(30265807-30265927)
chr5 (302-405)||(12166180-12166282)
chr5 (287-405)||(30001960-30002078)
chr5 (285-405)||(667630-667750)
chr5 (285-406)||(36103626-36103748)
chr5 (278-406)||(9160920-9161051)
chr5 (285-405)||(12681085-12681200)
chr5 (285-375)||(27572091-27572181)
chr5 (349-406)||(35358947-35359004)
chr5 (306-406)||(9988875-9988970)
chr5 (285-353)||(23780771-23780839)
chr5 (285-353)||(23867724-23867792)
chr5 (349-405)||(10174096-10174152)
chr5 (294-385)||(2588930-2589021)
chr5 (363-406)||(32521237-32521280)
chr5 (300-385)||(25495046-25495131)
chr5 (292-385)||(34881360-34881453)
chr5 (286-385)||(40692443-40692541)
chr5 (300-406)||(1048728-1048833)
chr5 (300-374)||(10090267-10090341)
chr5 (300-350)||(34111843-34111893)
[»] scaffold0308 (1 HSPs)
scaffold0308 (279-405)||(5899-6025)
[»] scaffold0029 (1 HSPs)
scaffold0029 (285-406)||(40590-40721)
[»] scaffold0204 (2 HSPs)
scaffold0204 (289-406)||(25814-25930)
scaffold0204 (286-376)||(14470-14560)
[»] scaffold0688 (2 HSPs)
scaffold0688 (300-377)||(1120-1196)
scaffold0688 (300-377)||(7689-7765)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 2e-48; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 279 - 405
Target Start/End: Original strand, 10661094 - 10661220
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgata 378  Q
    ||||| |||||| |||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  10661094 attaggggtgttcgcggtgcggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatt 10661193  T
Q  379 tttaaaaagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||||||||    
T  10661194 tttaaaaagtcatccaaaccaaaccaa 10661220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 285 - 405
Target Start/End: Original strand, 44672735 - 44672855
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||| ||||| ||||||    
T  44672735 ggtgtttgcggtgcagtttggttcggttttgagcataaaagtcatccaaatcgcgagataaaaaaacatgcggtttggtttggttcgattgatttttaaa 44672834  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||    
T  44672835 aagtcatccaaaccaaaccaa 44672855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 279 - 406
Target Start/End: Complemental strand, 3006714 - 3006587
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgata 378  Q
    ||||| |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||     
T  3006714 attagaggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatt 3006615  T
Q  379 tttaaaaagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||||||||    
T  3006614 tttaaaaagtcatccaaaccaaaccaaa 3006587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 33068227 - 33068333
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  33068227 gtttggttcggttttgagcataaaagtcatccaaaccgcaagataaaaaagcatgcggtttggtttggttcagttgatttttaaaaagtcatccaaacca 33068326  T
Q  400 aaccaaa 406  Q
    || ||||    
T  33068327 aatcaaa 33068333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 36910467 - 36910347
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || |||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||||||  |||||||||||||||| ||||||    
T  36910467 ggtgttcgcggtgcggtttggtttgattttgagcataaaagtcatcaaaaccgcgagataaaaaagcatgcggtttagtttggttcggttgatttttaaa 36910368  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||    
T  36910367 aagtcatccaaaccaaaccaa 36910347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 300 - 406
Target Start/End: Complemental strand, 5803367 - 5803261
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    |||||||||| |||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  5803367 gtttggttcgatttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaacca 5803268  T
Q  400 aaccaaa 406  Q
    |||||||    
T  5803267 aaccaaa 5803261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 14549185 - 14549291
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||||||  |||||||| |||||| |||||||||| |||||||||||||||||||||    
T  14549185 gtttgattcggttttgagcataaaagtcatccaaaccgtgagataaaaaaatatgcggtttggtttgattcggttgatttttaaaaagtcatccaaacca 14549284  T
Q  400 aaccaaa 406  Q
    |||||||    
T  14549285 aaccaaa 14549291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 280 - 406
Target Start/End: Complemental strand, 18170161 - 18170040
Alignment:
Q  280 ttagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatat 379  Q
    |||| |||||||| || || ||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |||     ||||||||||||||||  |    
T  18170161 ttaggggtgtttgaggtgcggtttggttcggttttgaacataaaagtcatctaaaccgcgagataaaaaagcgtgc-----ggtttggttcggttgagtt 18170067  T
Q  380 ttaaaaagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||| |||||||||||||    
T  18170066 ttaaaaagtcatcaaaaccaaaccaaa 18170040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 280 - 406
Target Start/End: Complemental strand, 18633729 - 18633608
Alignment:
Q  280 ttagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatat 379  Q
    |||| |||||||| || || ||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |||     ||||||||||||||||  |    
T  18633729 ttaggggtgtttgaggtgcggtttggttcggttttgaacataaaagtcatctaaaccgcgagataaaaaagcgtgc-----ggtttggttcggttgagtt 18633635  T
Q  380 ttaaaaagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||| |||||||||||||    
T  18633634 ttaaaaagtcatcaaaaccaaaccaaa 18633608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 285 - 369
Target Start/End: Original strand, 30392085 - 30392169
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggtt 369  Q
    ||||||||||| || ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  30392085 ggtgtttgcggtgcggtgcggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggtt 30392169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 302 - 396
Target Start/End: Complemental strand, 6200972 - 6200878
Alignment:
Q  302 ttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaa 396  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||||| |||||||||  ||||||||  |||||| ||||||||||||||||||    
T  6200972 ttggttcggttttgagcataaaagtaatccaaactgcgagataaaaaaacatgcggtttagtttggttaagttgatttttaaaaagtcatccaaa 6200878  T

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Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 406
Target Start/End: Original strand, 44336710 - 44336840
Alignment:
Q  277 caattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagat-aaaaaagcatgcggttaggtttggttcggttg 375  Q
    |||||||  ||||| |||| || ||||||||||||||||||  ||||| |||||| |||||| |||| |||||| ||||||||| |||||||||||||||    
T  44336710 caattaggagtgttcgcggtgcggtttggttcggttttgagtttaaaagtcatccgaaccgcaagataaaaaaaacatgcggtttggtttggttcggttg 44336809  T
Q  376 atatttaaaaagtcatccaaaccaaaccaaa 406  Q
    |  |||||||    |||| ||||||||||||    
T  44336810 acttttaaaatacaatccgaaccaaaccaaa 44336840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 300 - 405
Target Start/End: Original strand, 3681895 - 3681994
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    |||||||||||||||||  |||||| | |||||||||||||||||||||| ||||||||| |||||||||     ||  ||||||||||||||||||| |    
T  3681895 gtttggttcggttttgaatataaaagttatccaaaccgcgagataaaaaa-catgcggtttggtttggtt-----gacttttaaaaagtcatccaaacta 3681988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 33565901 - 33565994
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagat--aaaaaagcatgcggttaggtttggttcggttga 376  Q
    ||||||||||| ||||||||||| |||||||||  ||||| ||||   |||||| ||||  ||||||| |||||||| ||||||||||||||||    
T  33565901 ggtgtttgcggtgcagtttggtttggttttgaggctaaaagtcatttgaaccgcaagataaaaaaaagtatgcggtttggtttggttcggttga 33565994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 7428554 - 7428469
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    ||||||||||||| ||||  ||||| |||||  ||||||  |||||||| |||||||||| ||||||||||||||||  |||||||    
T  7428554 gtttggttcggttatgaggttaaaagtcatctgaaccgcatgataaaaatgcatgcggtttggtttggttcggttgacttttaaaa 7428469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 374
Target Start/End: Complemental strand, 12883877 - 12883777
Alignment:
Q  274 ttccaattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggt 373  Q
    |||||| ||| |||||| |||| || ||||||||||||||||||  ||||| |||| | |||| | | ||||| ||| |||||||| |||||||||||||    
T  12883877 ttccaagtaggggtgttcgcggtgcggtttggttcggttttgaggttaaaagtcattcgaaccacaaaataaataagtatgcggtttggtttggttcggt 12883778  T
Q  374 t 374  Q
    |    
T  12883777 t 12883777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 45366266 - 45366344
Alignment:
Q  297 gcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttg 375  Q
    |||||||||| ||||||||||  ||||| ||||   |||||| |||||||||||||| ||||| | |||||||||||||    
T  45366266 gcagtttggtccggttttgaggttaaaagtcatatgaaccgcaagataaaaaagcatacggtttgatttggttcggttg 45366344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 31497729 - 31497656
Alignment:
Q  301 tttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggtt 374  Q
    ||||||| ||||||||   ||||| |||||| |||||| ||||||||||||| |||||| ||||||||| ||||    
T  31497729 tttggtttggttttgaaggtaaaagtcatccgaaccgcaagataaaaaagcacgcggtttggtttggtttggtt 31497656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 364
Target Start/End: Complemental strand, 38926526 - 38926473
Alignment:
Q  311 ttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtt 364  Q
    |||||||||||||| |||||| |||||||| |||||||| ||||||||| ||||    
T  38926526 ttttgagcataaaagtcatcctaaccgcgaaataaaaaaacatgcggttcggtt 38926473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 4785198 - 4785282
Alignment:
Q  301 tttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||||||||||||||||  ||||| |||| | ||||||   ||||||||| |||||||| | ||||||||||||||  |||||||    
T  4785198 tttggttcggttttgagattaaaagtcatacgaaccgcagaataaaaaagtatgcggtttgatttggttcggttgacttttaaaa 4785282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 40436382 - 40436474
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagat-aaaaaagcatgcggttaggtttggttcggttga 376  Q
    |||||| |||| || ||||||||||||||||||  ||||| | |||||||  || |||| |||||| ||||| ||| ||||||||||||||||    
T  40436382 ggtgttcgcggtgcggtttggttcggttttgagggtaaaagtgatccaaattgcaagataaaaaaaacatgccgtttggtttggttcggttga 40436474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 8036024 - 8036079
Alignment:
Q  320 taaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttg 375  Q
    ||||| |||||  |||||| |||||||||||||||| ||| |||||||||||||||    
T  8036024 taaaagtcatctgaaccgcaagataaaaaagcatgcagtttggtttggttcggttg 8036079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 385
Target Start/End: Complemental strand, 24682209 - 24682126
Alignment:
Q  302 ttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    ||||||||||||||||  ||||| |||||| |||||| ||||||| ||| |||| ||| |||||| |||| ||||  |||||||    
T  24682209 ttggttcggttttgaggctaaaattcatccgaaccgcaagataaataagtatgcagtttggtttgattcgattgacttttaaaa 24682126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 15272427 - 15272358
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggtt 369  Q
    ||||||| ||||||||||  ||||| |||||| ||| ||  |||||||||||| |||||| |||||||||    
T  15272427 gtttggtacggttttgagattaaaagtcatccgaacggcaggataaaaaagcacgcggtttggtttggtt 15272358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 15452796 - 15452727
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggtt 369  Q
    ||||||| ||||||||||  ||||| |||||| ||| ||  |||||||||||| |||||| |||||||||    
T  15452796 gtttggtacggttttgagattaaaagtcatccgaacggcaggataaaaaagcacgcggtttggtttggtt 15452727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 3e-47; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 44979905 - 44979785
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  44979905 ggtgttcgcggtgcggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaa 44979806  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||    
T  44979805 aagtcatccaaaccaaaccaa 44979785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 25298387 - 25298270
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||| |||| ||||||||||||| ||| ||||| ||||||||||||||||| ||||||    
T  25298387 ggtgttcgcggtgcagtttggttcggttttgagcataaaagtcatcgaaactgcgagataaaaaaacattcggttcggtttggttcggttgatttttaaa 25298288  T
Q  385 aagtcatccaaaccaaac 402  Q
    ||||||||||||||||||    
T  25298287 aagtcatccaaaccaaac 25298270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 36413776 - 36413655
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  36413776 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaa 36413677  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||    
T  36413676 aagtcatccaaaccaaaccaaa 36413655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 278 - 405
Target Start/End: Original strand, 9811330 - 9811457
Alignment:
Q  278 aattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgat 377  Q
    |||||| |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||| ||||||||| |||||||||||||||||    
T  9811330 aattaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaaacatgcggtttggtttggttcggttgat 9811429  T
Q  378 atttaaaaagtcatccaaaccaaaccaa 405  Q
     |||||||||||||||||||||||||||    
T  9811430 ttttaaaaagtcatccaaaccaaaccaa 9811457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 300 - 405
Target Start/End: Original strand, 44035267 - 44035373
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaa-aagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacc 398  Q
    ||||||||||||||||||||||||| ||||||||||||| | |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  44035267 gtttggttcggttttgagcataaaagtcatccaaaccgcaaaataaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaacc 44035366  T
Q  399 aaaccaa 405  Q
    |||||||    
T  44035367 aaaccaa 44035373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 11375867 - 11375968
Alignment:
Q  304 ggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaacc 403  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||    
T  11375867 ggttcggttttaagcataaaagtcatccaaaccgcgagataaaaaaacatgcagtttggtttggttcggttgatttttaaaaagtcatccaaaccaaacc 11375966  T
Q  404 aa 405  Q
    ||    
T  11375967 aa 11375968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 16578597 - 16578703
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  16578597 gtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcgattgatttttaaaaagtcatccaaacca 16578696  T
Q  400 aaccaaa 406  Q
    |||||||    
T  16578697 aaccaaa 16578703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 279 - 407
Target Start/End: Complemental strand, 19937266 - 19937139
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgata 378  Q
    ||||| |||||| |||| || |||||||| || ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||||||||| |||||     
T  19937266 attaggggtgttcgcggtgcggtttggttaggatttgagcataaaagtcatccaaaccgcgagataaaaaaacatg-ggtttggtttggttcgattgatt 19937168  T
Q  379 tttaaaaagtcatccaaaccaaaccaaag 407  Q
    |||||||||||||||||| ||||||||||    
T  19937167 tttaaaaagtcatccaaatcaaaccaaag 19937139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 42785765 - 42785644
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || |||||||||| |||||||||||||| ||||||||| || |||||||||||| |||||||| ||||||||||| ||||| ||||||    
T  42785765 ggtgttcgcggtgcggtttggttcgattttgagcataaaagtcatccaaatcgtgagataaaaaaggatgcggtttggtttggttcgcttgatttttaaa 42785666  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    || |||| ||||||||||||||    
T  42785665 aactcattcaaaccaaaccaaa 42785644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 279 - 400
Target Start/End: Complemental strand, 17916993 - 17916872
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgata 378  Q
    ||||| |||||| |||| ||  |||||||| ||||||||||||||| | ||||||||   ||||||||||| ||||||||| |||||||||||||||||     
T  17916993 attaggggtgttcgcggtgcgatttggttcagttttgagcataaaagttatccaaactttgagataaaaaaacatgcggtttggtttggttcggttgatt 17916894  T
Q  379 tttaaaaagtcatccaaaccaa 400  Q
    ||||||||||||||||||||||    
T  17916893 tttaaaaagtcatccaaaccaa 17916872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 301 - 405
Target Start/End: Original strand, 18356866 - 18356970
Alignment:
Q  301 tttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaa 400  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||  || |||||| | || || ||||||||||||| ||||||||    
T  18356866 tttggttcggttttgagcataaaagtcatctaaactgcgagataaagaagcatgcggtatggattggtttgattaatttttaaaaagtcattcaaaccaa 18356965  T
Q  401 accaa 405  Q
    |||||    
T  18356966 accaa 18356970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 15320715 - 15320598
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || |||||||||| |||||||  ||||| |||||||||||| ||  ||||||||||||| |||||||||||||| |||||| ||||||    
T  15320715 ggtgttcgcggtgcggtttggttcgattttgaggctaaaagtcatccaaaccgtgaagtaaaaaagcatgcagttaggtttggttcagttgatttttaaa 15320616  T
Q  385 aagtcatccaaaccaaac 402  Q
    |    |||||||||||||    
T  15320615 ataaaatccaaaccaaac 15320598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 34910257 - 34910321
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaa 349  Q
    ||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  34910257 ggtgtttgcggtgcagtttggttcagttttgagcataaaaatcattcaaaccgcgagataaaaaa 34910321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 279 - 385
Target Start/End: Original strand, 41461022 - 41461128
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgata 378  Q
    ||||| |||||| |||| |||||||||||||||||| ||  ||||| ||| || |||||| || |||||||| |||||||| ||||||||||||||||      
T  41461022 attaggggtgttcgcggtgcagtttggttcggtttttagactaaaagtcaaccgaaccgcaagctaaaaaagtatgcggtttggtttggttcggttgact 41461121  T
Q  379 tttaaaa 385  Q
    |||||||    
T  41461122 tttaaaa 41461128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 297 - 385
Target Start/End: Complemental strand, 27301608 - 27301520
Alignment:
Q  297 gcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||||||||||||||||||||  |||||  |||||  ||||| |||||||||||||||||||| |||||| |||||||||  |||||||    
T  27301608 gcagtttggttcggttttgagattaaaagccatccggaccgcaagataaaaaagcatgcggtttggtttgattcggttgacttttaaaa 27301520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 279 - 385
Target Start/End: Complemental strand, 12041731 - 12041625
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgata 378  Q
    ||||| ||||||||||| |  ||||||||||||||||||  ||||| |||||  |||||  |||||||||| ||||||||| | ||||||||||||||      
T  12041731 attaggggtgtttgcggtgtggtttggttcggttttgaggctaaaagtcatctgaaccgtaagataaaaaaacatgcggtttgatttggttcggttgact 12041632  T
Q  379 tttaaaa 385  Q
    |||||||    
T  12041631 tttaaaa 12041625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 385
Target Start/End: Original strand, 17762703 - 17762788
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||| ||| |||||||||  ||||| ||| || ||||||||||||||||| ||||||||| ||||||||||||||||  |||||||    
T  17762703 gttttgtttggttttgaggctaaaagtcaaccgaaccgcgagataaaaaaacatgcggtttggtttggttcggttgacttttaaaa 17762788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 278 - 406
Target Start/End: Complemental strand, 5862774 - 5862646
Alignment:
Q  278 aattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgat 377  Q
    |||||| |||||| |||| || ||||| || | |||||||  ||||| ||||| ||| ||| | ||||||||| |||||||| ||||||||||||||||     
T  5862774 aattaggggtgttcgcggtgcggtttgatttgattttgagggtaaaagtcatctaaatcgcaaaataaaaaagtatgcggtttggtttggttcggttgac 5862675  T
Q  378 atttaaaaagtcatccaaaccaaaccaaa 406  Q
     |||||||    |||| ||||||||||||    
T  5862674 ttttaaaataaaatccgaaccaaaccaaa 5862646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 278 - 405
Target Start/End: Original strand, 1330949 - 1331076
Alignment:
Q  278 aattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgat 377  Q
    |||||| ||||||||||  || ||||| ||||||||| ||   |||| |||||| |||| | || ||||||||||||| | | ||||||||||||||||     
T  1330949 aattaggggtgtttgcgatgcggtttgattcggttttaagacgaaaaatcatccgaaccacaaggtaaaaaagcatgcagattggtttggttcggttgac 1331048  T
Q  378 atttaaaaagtcatccaaaccaaaccaa 405  Q
     |||||||    ||||||||||||||||    
T  1331049 ttttaaaataaaatccaaaccaaaccaa 1331076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 28790467 - 28790573
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||||||| |||||||   ||||| |||||  |||||| |||||||||||||||||||| | || | |||||||||  |||||||    ||||||||||    
T  28790467 gtttggttcagttttgatgttaaaagtcatctgaaccgcaagataaaaaagcatgcggtttgattagattcggttgacttttaaaataaaatccaaacca 28790566  T
Q  400 aaccaaa 406  Q
    |||||||    
T  28790567 aaccaaa 28790573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 300 - 376
Target Start/End: Original strand, 44085450 - 44085527
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaa-aagcatgcggttaggtttggttcggttga 376  Q
    ||||||||| ||||||||  | ||| |||||  |||||| |||||||| |||||||||||| ||||||||||||||||    
T  44085450 gtttggttcagttttgagggttaaagtcatctgaaccgcaagataaaaaaagcatgcggtttggtttggttcggttga 44085527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 285 - 369
Target Start/End: Original strand, 12841492 - 12841576
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggtt 369  Q
    ||||||||||| ||||||| |||||||||||||  ||||| ||||   || ||  ||||||||| |||||||||| |||||||||    
T  12841492 ggtgtttgcggtgcagttttgttcggttttgagattaaaaatcatatgaatcgtaagataaaaatgcatgcggtttggtttggtt 12841576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 7e-45; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 6004523 - 6004403
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    ||||||||||  || ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  6004523 ggtgtttgcgatgcggtttggttcggttttcagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaa 6004424  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||    
T  6004423 aagtcatccaaaccaaaccaa 6004403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 286 - 406
Target Start/End: Complemental strand, 4669782 - 4669662
Alignment:
Q  286 gtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||||||||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  4669782 gtgtttgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 4669683  T
Q  386 agtcatccaaaccaaaccaaa 406  Q
    |||||||| ||||||||||||    
T  4669682 agtcatccgaaccaaaccaaa 4669662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 297 - 405
Target Start/End: Complemental strand, 21586967 - 21586859
Alignment:
Q  297 gcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaa 396  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| |||||| ||| |||||| ||||||||||||||||||    
T  21586967 gcagtttggttcggttttgagcttaaaagtcatccaaaccgcgagataaaaaagcatgcagtttggtttgattcagttgatttttaaaaagtcatccaaa 21586868  T
Q  397 ccaaaccaa 405  Q
    |||||||||    
T  21586867 ccaaaccaa 21586859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 286 - 405
Target Start/End: Original strand, 32880248 - 32880367
Alignment:
Q  286 gtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||||||||| || ||||||||||| ||||||||||||| || |||||||||||||||||||||||||| |||| | ||||||||||||||| |||||||    
T  32880248 gtgtttgcggtgcggtttggttcggctttgagcataaaagtcctccaaaccgcgagataaaaaagcatgtggtttgatttggttcggttgatttttaaaa 32880347  T
Q  386 agtcatccaaaccaaaccaa 405  Q
    |||||| |||||||||||||    
T  32880348 agtcatacaaaccaaaccaa 32880367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 285 - 405
Target Start/End: Original strand, 34794541 - 34794661
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||    
T  34794541 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcgatttggtttggttcggttgatttttaaa 34794640  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||    
T  34794641 aagtcatccaaaccaaaccaa 34794661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 51149793 - 51149673
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  51149793 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaa 51149694  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||| ||||||||||||||||    
T  51149693 aagtgatccaaaccaaaccaa 51149673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 280 - 406
Target Start/End: Complemental strand, 35402346 - 35402220
Alignment:
Q  280 ttagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatat 379  Q
    |||| |||||| |||| || ||||||||||||||  ||||||| | ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||| |    
T  35402346 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaatcgcgagagaaaaaaacatgcggtttggtttggttcggttgattt 35402247  T
Q  380 ttaaaaagtcatccaaaccaaaccaaa 406  Q
    |||||||||||||||||||||||||||    
T  35402246 ttaaaaagtcatccaaaccaaaccaaa 35402220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 10369158 - 10369279
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | |||||||||| |||||| |||||| ||||||||| |||| |||||| ||||| ||||||    
T  10369158 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaactgcgagagaaaaaaacatgcggtttggttcggttcgtttgatttttaaa 10369257  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||    
T  10369258 aagtcatccaaaccaaaccaaa 10369279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 9827914 - 9827794
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || | ||||||||||||| ||||||||| ||||||||||| ||||||||  |||||||||  | | ||||||| ||||||| ||||||    
T  9827914 ggtgttcgcggtgcggcttggttcggttttaagcataaaagtcatccaaaccacgagataattaagcatgcgacttgatttggttaggttgatttttaaa 9827815  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||    
T  9827814 aagtcatccaaaccaaaccaa 9827794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 280 - 406
Target Start/End: Original strand, 43030358 - 43030484
Alignment:
Q  280 ttagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatat 379  Q
    |||| |||||| |||| || ||||| ||  ||||||||||||||| |||| | || ||| ||||||||||| |||| ||| ||||||||||||||||| |    
T  43030358 ttaggggtgttcgcggtgcggtttgatttagttttgagcataaaagtcatgcgaatcgcaagataaaaaagtatgcagtttggtttggttcggttgattt 43030457  T
Q  380 ttaaaaagtcatccaaaccaaaccaaa 406  Q
    |||||||||||||||||| ||||||||    
T  43030458 ttaaaaagtcatccaaactaaaccaaa 43030484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 299 - 405
Target Start/End: Complemental strand, 48032966 - 48032865
Alignment:
Q  299 agtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacc 398  Q
    |||||||||| ||||||||||||||||    ||||||  |||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||    
T  48032966 agtttggttcagttttgagcataaaac----ccaaactacgagataaaaaagcatgcggtttggtt-ggttcggttgatttttaaaaattcatccaaacc 48032872  T
Q  399 aaaccaa 405  Q
    |||||||    
T  48032871 aaaccaa 48032865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 300 - 405
Target Start/End: Complemental strand, 50562691 - 50562586
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    |||||||||| |||| ||||||||| ||||| ||||  ||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||| || ||    
T  50562691 gtttggttcgattttaagcataaaagtcatctaaactacgagataaaaaagcatgtggtttggtttggttcggttgatttttaaaaattcatcccaatca 50562592  T
Q  400 aaccaa 405  Q
    ||||||    
T  50562591 aaccaa 50562586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 35532260 - 35532193
Alignment:
Q  297 gcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtt 364  Q
    |||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||| ||||    
T  35532260 gcagtttggttcggttttgagcataaaagtcatccaaattgcgagataaaaaagcatgcggtttggtt 35532193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 54121967 - 54122088
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    ||||||||||| |||||||| |||| |||||||  ||||| |||||| |||||  ||||||||||| |||||||| ||||||||||||||||  ||||||    
T  54121967 ggtgtttgcggtgcagtttgattcgattttgaggttaaaagtcatccgaaccgtaagataaaaaagtatgcggtttggtttggttcggttgacttttaaa 54122066  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    |    |||| ||||||||||||    
T  54122067 ataaaatccgaaccaaaccaaa 54122088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 300 - 400
Target Start/End: Original strand, 39097907 - 39098010
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaac----cgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaa 395  Q
    |||||||||| |||||||||||||| ||||||||||     ||||||||||||| ||||||||| | |||||||| |||||| ||||||||||| |||||    
T  39097907 gtttggttcgattttgagcataaaagtcatccaaactgcatgcgagataaaaaa-catgcggtttgatttggttcagttgatttttaaaaagtcgtccaa 39098005  T
Q  396 accaa 400  Q
    |||||    
T  39098006 accaa 39098010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 286 - 385
Target Start/End: Complemental strand, 55467777 - 55467678
Alignment:
Q  286 gtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||||||||| || ||||||||||||||||||  ||||| |||||| ||| || ||||||| ||| |||||||| ||||||||||||||||  |||||||    
T  55467777 gtgtttgcggtgcggtttggttcggttttgaggctaaaagtcatccgaactgcaagataaataagtatgcggtttggtttggttcggttgacttttaaaa 55467678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 33360968 - 33361021
Alignment:
Q  353 tgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaaa 406  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  33360968 tgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 33361021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 17144850 - 17144766
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    ||||||||||||||||||  ||||| ||||||||||||| |||| |||||| |||||| | ||||||||||||||||  |||||||    
T  17144850 gtttggttcggttttgaggctaaaagtcatccaaaccgcaagat-aaaaagtatgcggattggtttggttcggttgacttttaaaa 17144766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 2832520 - 2832446
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggtt 374  Q
    |||||||| |||||||||  ||||| |||||| |||| | |||||||||||||||||||| ||||||||| ||||    
T  2832520 gtttggtttggttttgaggctaaaagtcatccgaaccacaagataaaaaagcatgcggtttggtttggtttggtt 2832446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 37044867 - 37044941
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggtt 359  Q
    ||||||| ||| || ||||||||||||||||||   |||| ||||||||||||| |||||||||| |||||||||    
T  37044867 ggtgtttacggtgcggtttggttcggttttgagagaaaaagtcatccaaaccgcaagataaaaaaacatgcggtt 37044941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 287 - 385
Target Start/End: Original strand, 20846418 - 20846518
Alignment:
Q  287 tgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaa--gcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||| |||| ||||||||||||||||| |||  ||||| |||||| |||||| ||||||||||   |||||| || ||||||||||||||||  ||||||    
T  20846418 tgttcgcggtgcagtttggttcggtttcgagagtaaaagtcatccgaaccgcaagataaaaaaatacatgcgctttggtttggttcggttgacttttaaa 20846517  T
Q  385 a 385  Q
    |    
T  20846518 a 20846518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 280 - 385
Target Start/End: Complemental strand, 26292097 - 26291992
Alignment:
Q  280 ttagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatat 379  Q
    |||| |||||| |||| || |||||||||| |||| |   ||||| ||||||||||||| ||||||||||   ||||||| | ||||||||||||||| |    
T  26292097 ttaggggtgttcgcggtgcggtttggttcgattttaaaattaaaaatcatccaaaccgcaagataaaaaattgtgcggtttgctttggttcggttgattt 26291998  T
Q  380 ttaaaa 385  Q
    ||||||    
T  26291997 ttaaaa 26291992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 26758186 - 26758270
Alignment:
Q  301 tttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||||||||||||| ||  ||||| |||||| |||||| ||||||| ||| || ||||| ||||||||||||||||  |||||||    
T  26758186 tttggttcggttttaaggttaaaagtcatccgaaccgcaagataaataagtatacggtttggtttggttcggttgacttttaaaa 26758270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 42363346 - 42363270
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttga 376  Q
    ||||||||||||||||||  ||||| | ||   |||||| |||||||||| ||||||||| ||||||||||||||||    
T  42363346 gtttggttcggttttgagggtaaaagtaatttgaaccgcaagataaaaaatcatgcggtttggtttggttcggttga 42363270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 385
Target Start/End: Complemental strand, 22257617 - 22257535
Alignment:
Q  303 tggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||||||||||||||  ||||| |||||| |||||||||||||| ||| |||||||| | ||| |||| |||||  |||||||    
T  22257617 tggttcggttttgagactaaaagtcatccgaaccgcgagataaataagtatgcggtttgatttagttcagttgacttttaaaa 22257535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 297 - 385
Target Start/End: Complemental strand, 10481769 - 10481681
Alignment:
Q  297 gcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    ||||||||||||||||||||| |||||| ||||   |||| | |||||||||  || || ||| ||||||||||||||||  |||||||    
T  10481769 gcagtttggttcggttttgaggataaaagtcattggaaccacaagataaaaagacacgcagtttggtttggttcggttgacttttaaaa 10481681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 278 - 376
Target Start/End: Complemental strand, 38652131 - 38652034
Alignment:
Q  278 aattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttga 376  Q
    |||||| ||| || |||| || |||||||| ||||||||   ||||| |||||| || ||| ||||||||||  |||||||| ||||||||||||||||    
T  38652131 aattaggggtattcgcggtgcggtttggtttggttttgaaggtaaaagtcatccgaatcgcaagataaaaaat-atgcggtttggtttggttcggttga 38652034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 13852270 - 13852376
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  13852270 gtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaacca 13852369  T
Q  400 aaccaaa 406  Q
    |||||||    
T  13852370 aaccaaa 13852376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 47903200 - 47903314
Alignment:
Q  291 tgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtca 390  Q
    ||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  47903200 tgcggtgcggtttggttcggttttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtca 47903299  T
Q  391 tccaaaccaaaccaa 405  Q
    |||||||||||||||    
T  47903300 tccaaaccaaaccaa 47903314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 27054868 - 27054748
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    ||||||||||| || |||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  27054868 ggtgtttgcggtgcggtttggtttggttttgagcaaaaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaa 27054769  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    ||| |||||||||||||||||    
T  27054768 aagccatccaaaccaaaccaa 27054748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 277 - 406
Target Start/End: Original strand, 47069607 - 47069736
Alignment:
Q  277 caattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttga 376  Q
    ||||||| |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  47069607 caattaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttga 47069706  T
Q  377 tatttaaaaagtcatccaaaccaaaccaaa 406  Q
    | ||||||||||||||||||||||||||||    
T  47069707 tttttaaaaagtcatccaaaccaaaccaaa 47069736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 278 - 406
Target Start/End: Complemental strand, 47204600 - 47204472
Alignment:
Q  278 aattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgat 377  Q
    |||||| |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  47204600 aattaggggtgttcgcggtgcggtttggttcggtttcaagcataacaatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgat 47204501  T
Q  378 atttaaaaagtcatccaaaccaaaccaaa 406  Q
     ||||||||||||||||||||||||||||    
T  47204500 ttttaaaaagtcatccaaaccaaaccaaa 47204472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 10671767 - 10671888
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  10671767 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaa 10671866  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||    
T  10671867 aagtcatccaaaccaaaccaaa 10671888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 279 - 405
Target Start/End: Complemental strand, 11206500 - 11206374
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgata 378  Q
    ||||| |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||| ||||||||| |||||||||||||||||     
T  11206500 attaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaaacatgcggtttggtttggttcggttgatt 11206401  T
Q  379 tttaaaaagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||||||||    
T  11206400 tttaaaaagtcatccaaaccaaaccaa 11206374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 3213358 - 3213237
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  3213358 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaa 3213259  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    |||||||||||| |||||||||    
T  3213258 aagtcatccaaatcaaaccaaa 3213237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 300 - 405
Target Start/End: Complemental strand, 7209390 - 7209285
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    |||||||||||||||||  |||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||    
T  7209390 gtttggttcggttttgaatataaaagtcatccaaaccacgagataaaaaagcatacggtttggtttggttcggttgatttttaaaaagtcatccaaacca 7209291  T
Q  400 aaccaa 405  Q
    ||||||    
T  7209290 aaccaa 7209285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 12117546 - 12117667
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    ||||||||||| || ||||||||||||||  || |||| | ||||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||    
T  12117546 ggtgtttgcggtgcggtttggttcggtttcaagtataataatcatccaaaccgcgagagaaaaaagcatgcagtttggtttggttcggttgatttttaaa 12117645  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||    
T  12117646 aagtcatccaaaccaaaccaaa 12117667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 280 - 402
Target Start/End: Complemental strand, 8769104 - 8768982
Alignment:
Q  280 ttagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatat 379  Q
    |||| |||||| |||| || ||||||||||||||  || |||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| |    
T  8769104 ttaggggtgttcgcggtgcggtttggttcggtttcaagtataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgattt 8769005  T
Q  380 ttaaaaagtcatccaaaccaaac 402  Q
    |||||||||||||||||||||||    
T  8769004 ttaaaaagtcatccaaaccaaac 8768982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 287 - 402
Target Start/End: Original strand, 5932644 - 5932759
Alignment:
Q  287 tgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaa 386  Q
    ||||||||| || ||||| ||||||||||||||||||| |||||  ||||||||||||| ||||||||||||| |||||||||  |||||| ||||||||    
T  5932644 tgtttgcggtgcggtttgattcggttttgagcataaaagtcatctgaaccgcgagataagaaagcatgcggtttggtttggttaagttgatttttaaaaa 5932743  T
Q  387 gtcatccaaaccaaac 402  Q
    ||||||||||||||||    
T  5932744 gtcatccaaaccaaac 5932759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 287 - 406
Target Start/End: Original strand, 10069142 - 10069261
Alignment:
Q  287 tgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaa 386  Q
    |||| |||| || ||||||||||||||||||||||||| ||||| ||||||||| |||||||| ||||| ||| |||||| |||||||||| ||||||||    
T  10069142 tgttcgcggtgcggtttggttcggttttgagcataaaagtcatctaaaccgcgatataaaaaaacatgctgtttggtttgattcggttgatttttaaaaa 10069241  T
Q  387 gtcatccaaaccaaaccaaa 406  Q
    ||||| ||||||||||||||    
T  10069242 gtcattcaaaccaaaccaaa 10069261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 302 - 405
Target Start/End: Complemental strand, 31983115 - 31983012
Alignment:
Q  302 ttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaa 401  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||  |||| ||| |||||||||| |||||| |||||||||||||||||||||||    
T  31983115 ttggttcggttttgagcataaaagttatccaaaccgcgagataaaaaaatatgcagtttggtttggttcagttgatttttaaaaagtcatccaaaccaaa 31983016  T
Q  402 ccaa 405  Q
    ||||    
T  31983015 ccaa 31983012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 308 - 406
Target Start/End: Original strand, 43429145 - 43429243
Alignment:
Q  308 cggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaaa 406  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||    
T  43429145 cggtttggagcataaaagtcatccaaaccgcgagataaaaatgcacgcggtttggtttggttcggttgatttttaaaaagtcatccaaacaaaaccaaa 43429243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 32823566 - 32823666
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    |||||||||| |||| ||||||||| ||||||||| |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  32823566 gtttggttcgatttttagcataaaagtcatccaaatcgcgagataaaaaagcatgcggtttgg-ttggttcggttgatttttaaaaagtcatccaaacca 32823664  T
Q  400 aa 401  Q
    ||    
T  32823665 aa 32823666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 305 - 400
Target Start/End: Complemental strand, 31876746 - 31876651
Alignment:
Q  305 gttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaa 400  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| |||| |||||||||||| ||||||||||||| ||||||||    
T  31876746 gttcggttttgagcataaaagtcatccaaaccgcgaaataaaaaagcatgcagtttggttcggttcggttgatttttaaaaagtcattcaaaccaa 31876651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 297 - 406
Target Start/End: Original strand, 1335277 - 1335385
Alignment:
Q  297 gcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaa 396  Q
    |||||||||||||||||||||||||||| |||||||| |  |||||||||||||||   |||| ||||||||||||||||| ||||||||||| ||||||    
T  1335277 gcagtttggttcggttttgagcataaaagtcatccaa-ctacgagataaaaaagcacctggtttggtttggttcggttgatttttaaaaagtcctccaaa 1335375  T
Q  397 ccaaaccaaa 406  Q
    ||||||||||    
T  1335376 ccaaaccaaa 1335385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 301 - 401
Target Start/End: Complemental strand, 18673310 - 18673210
Alignment:
Q  301 tttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaa 400  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | || ||||| |||| |||||  || |||||||||||||||||||    
T  18673310 tttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgtgatttggtttagttcagttgaatttcaaaaagtcatccaaaccaa 18673211  T
Q  401 a 401  Q
    |    
T  18673210 a 18673210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 289 - 405
Target Start/End: Complemental strand, 24361625 - 24361510
Alignment:
Q  289 tttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagt 388  Q
    ||||||| || |||||||||||||||||| | |||| ||||| |||||| ||||||||||| |||| |||| |||||||||| |||||| || ||||| |    
T  24361625 tttgcggtgcggtttggttcggttttgagaa-aaaagtcatctaaaccgtgagataaaaaaacatgtggtttggtttggttcagttgattttaaaaaaat 24361527  T
Q  389 catccaaaccaaaccaa 405  Q
    |||||||||||||||||    
T  24361526 catccaaaccaaaccaa 24361510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 311 - 406
Target Start/End: Complemental strand, 2409076 - 2408981
Alignment:
Q  311 ttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaaa 406  Q
    |||||||||||||| |||||||||||| ||||||||||| ||||||||| |||||| |||  ||||| |||||||||| || ||||| ||||||||    
T  2409076 ttttgagcataaaagtcatccaaaccgtgagataaaaaaccatgcggtttggtttgattcaattgatttttaaaaagttattcaaactaaaccaaa 2408981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 48675073 - 48675179
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||| ||||||||||  ||||||  ||| ||||||||| ||||||||||||| | |||| | ||||||||||||||| ||||| ||||||||||| |||    
T  48675073 gtttgcttcggttttggacataaatttcacccaaaccgcaagataaaaaagcacgtggtttgatttggttcggttgatttttaagaagtcatccaagcca 48675172  T
Q  400 aaccaaa 406  Q
    |||||||    
T  48675173 aaccaaa 48675179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 32942215 - 32942094
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| |||||||||||||||||||||  ||||| |||||| ||| || |||||||||| ||||||||| |||||| |||||||||  ||||||    
T  32942215 ggtgttcgcggtgcagtttggttcggttttgaggttaaaagtcatccgaactgcaagataaaaaaacatgcggtttggtttgattcggttgacttttaaa 32942116  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    |    |||| ||||||||||||    
T  32942115 atacaatccgaaccaaaccaaa 32942094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 45898196 - 45898128
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcat 353  Q
    |||||| |||| || |||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  45898196 ggtgttcgcggtgcggtttggttcggttttgtgcataaaagtcatccaaaccgcgagataaaaaagcat 45898128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 300 - 405
Target Start/End: Original strand, 36507908 - 36508013
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||||||| | ||| ||||| ||| |||||||||  | |||||| |||| ||||| ||| | |||| |||||||||| |||||||||||||||||||||    
T  36507908 gtttggttcagatttaagcattaaagtcatccaaattgtgagatagaaaatcatgcagtttgatttgattcggttgatttttaaaaagtcatccaaacca 36508007  T
Q  400 aaccaa 405  Q
    ||||||    
T  36508008 aaccaa 36508013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 359
Target Start/End: Complemental strand, 7205999 - 7205940
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggtt 359  Q
    ||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||    
T  7205999 gtttggttcggttttgaacatagaagtcatccaaaccgcgagataaaaaaacatgcggtt 7205940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 286 - 385
Target Start/End: Complemental strand, 8568689 - 8568590
Alignment:
Q  286 gtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    ||||| |||| || ||||||||||||||||||  ||||| |||||| |||||| ||||||| ||| |||||||| |||| |||||||||||  |||||||    
T  8568689 gtgttcgcggtgcggtttggttcggttttgaggttaaaagtcatccgaaccgcaagataaataagtatgcggtttggttcggttcggttgacttttaaaa 8568590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 300 - 386
Target Start/End: Complemental strand, 8118401 - 8118316
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaa 386  Q
    ||||||||| ||||||||  ||||| | |||| |||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||    
T  8118401 gtttggttctgttttgagggtaaaatttatccgaaccgcaagataaaaaagcatgtggtttggtttggttcggttgat-tttaaaaa 8118316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 7760066 - 7760167
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    |||||||||| |||||||||||||| |||||||||| | |||||||||||| || |      |||||||| ||||||| |||||||||||||| ||| ||    
T  7760066 gtttggttcgattttgagcataaaaatcatccaaactgtgagataaaaaagtatcc-----agtttggtttggttgatttttaaaaagtcatctaaatca 7760160  T
Q  400 aaccaaa 406  Q
    || ||||    
T  7760161 aatcaaa 7760167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 26215245 - 26215160
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||||||| |||||||||  ||||| ||||||||||||| |||||| ||||||| ||| |  |||||||||||||||  |||||||    
T  26215245 gtttggtttggttttgaggttaaaagtcatccaaaccgcaagataataaagcatacgggtttgtttggttcggttgacttttaaaa 26215160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 401
Target Start/End: Original strand, 11216113 - 11216217
Alignment:
Q  297 gcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaa 396  Q
    ||||||||||||| |||||||||||||| |||| | ||| | ||||||||||| |||| |||| | |||  || | ||||| ||||||||||  ||||||    
T  11216113 gcagtttggttcgattttgagcataaaaatcattcgaactgtgagataaaaaaacatgtggtttgatttaatttgattgatttttaaaaagttgtccaaa 11216212  T
Q  397 ccaaa 401  Q
    |||||    
T  11216213 ccaaa 11216217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 281 - 385
Target Start/End: Complemental strand, 16535883 - 16535779
Alignment:
Q  281 tagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatt 380  Q
    |||||||||| |||| ||||||| ||||| |||||||  ||||| |||| |||||||| || ||||||| |||||||||   || |||||||||||  ||    
T  16535883 tagtggtgttcgcggtgcagtttagttcgattttgaggctaaaagtcatgcaaaccgcaagttaaaaaaacatgcggtttcattaggttcggttgacttt 16535784  T
Q  381 taaaa 385  Q
    |||||    
T  16535783 taaaa 16535779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 281 - 385
Target Start/End: Original strand, 16629779 - 16629883
Alignment:
Q  281 tagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatt 380  Q
    |||||||||| |||| ||||||| ||||| |||||||  ||||| |||| |||||||| || ||||||| |||||||||   || |||||||||||  ||    
T  16629779 tagtggtgttcgcggtgcagtttagttcgattttgaggctaaaagtcatgcaaaccgcaagttaaaaaaacatgcggtttcattaggttcggttgacttt 16629878  T
Q  381 taaaa 385  Q
    |||||    
T  16629879 taaaa 16629883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 48642745 - 48642817
Alignment:
Q  304 ggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttga 376  Q
    ||||||||||||||  ||||| |||||  |||||| |||| ||||| ||||||||| ||||||||||||||||    
T  48642745 ggttcggttttgagggtaaaattcatctgaaccgcaagattaaaaaacatgcggtttggtttggttcggttga 48642817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 376
Target Start/End: Complemental strand, 4153863 - 4153772
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttga 376  Q
    ||||||| ||| || ||||| ||| ||||||||  ||||| |||| | |||  || ||||||||||||||||||  ||||||||||||||||    
T  4153863 ggtgtttacggtgcggtttgattcagttttgaggctaaaagtcattcgaacaacgggataaaaaagcatgcggtatggtttggttcggttga 4153772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 23729369 - 23729414
Alignment:
Q  320 taaaactcatccaaaccgcgagataaaaaagcatgcggttaggttt 365  Q
    ||||| |||||| |||||| |||||||||||||||||||| |||||    
T  23729369 taaaaatcatccgaaccgcaagataaaaaagcatgcggtttggttt 23729414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 90; Significance: 5e-43; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 69676 - 69555
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  69676 ggtgttcgcggtgcggtttggttcgattttgagcataaaagtcatccaaaccgcgagataaaaaagcatgtggtttggtttggttcggttgatttttaaa 69577  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||    
T  69576 aagtcatccaaaccaaaccaaa 69555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 5e-43; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 40806954 - 40806833
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    ||||||||||| |  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||    
T  40806954 ggtgtttgcggtgtggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcgatttggtttggttcggttgatttttaaa 40806855  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    || |||||||||||||||||||    
T  40806854 aaatcatccaaaccaaaccaaa 40806833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 40900219 - 40900098
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||||    
T  40900219 ggtgttcgcggtgcggtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcagttgatttttaaa 40900120  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||    
T  40900119 aagtcatccaaaccaaaccaaa 40900098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 50571094 - 50570973
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  50571094 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaa 50570995  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||    
T  50570994 aagtcatccaaaccaaaccaaa 50570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 279 - 406
Target Start/End: Complemental strand, 29644267 - 29644140
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgata 378  Q
    ||||| |||||| |||| || ||||||||||||||  | ||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||     
T  29644267 attaggggtgttcgcggtgcggtttggttcggtttcaaacataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatt 29644168  T
Q  379 tttaaaaagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||||||||    
T  29644167 tttaaaaagtcatccaaaccaaaccaaa 29644140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 300 - 405
Target Start/End: Complemental strand, 5262085 - 5261980
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||    
T  5262085 gtttgattcggttttgagcataaaagtcatccaaaccgcaagataaaaaagcatgcggtttggtttagttcagttgatttttaaaaagtcatccaaacca 5261986  T
Q  400 aaccaa 405  Q
    ||||||    
T  5261985 aaccaa 5261980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 29636720 - 29636841
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  29636720 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaa 29636819  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||| ||||||||||||||||||    
T  29636820 aagccatccaaaccaaaccaaa 29636841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 279 - 406
Target Start/End: Original strand, 42557665 - 42557792
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgata 378  Q
    ||||| |||||| |||| || ||||||||||||||  ||||||| | |||| |||||||||||| |||||||||||||||| |||||||||||||||||     
T  42557665 attaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcattcaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatt 42557764  T
Q  379 tttaaaaagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||| ||||    
T  42557765 tttaaaaagtcatccaaaccaaatcaaa 42557792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 32136639 - 32136760
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    ||||||||| | || ||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||| || ||||||||||| ||||| ||||||    
T  32136639 ggtgtttgcagtgcggtttggttcggttttgaacataaaagtcacccaaacctcgagataaaaaagcatgcgatttggtttggttcgattgatttttaaa 32136738  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    || |||||||||||||||||||    
T  32136739 aattcatccaaaccaaaccaaa 32136760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 285 - 405
Target Start/End: Original strand, 36077519 - 36077639
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | |||| |||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||    
T  36077519 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcattcaaaccgcgagagaaaaaagtatgcggtttggtttggttcggttgatttttaaa 36077618  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||    
T  36077619 aagtcatccaaaccaaaccaa 36077639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 300 - 405
Target Start/End: Original strand, 48996046 - 48996151
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    |||||||||| |||| | ||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||||||||| |||||||||| ||||||||||    
T  48996046 gtttggttcgattttaatcataaaaatcatccaaaccgcgaaataaaaaagcatgtggtttggtttggttcggttgatttttaaaaagttatccaaacca 48996145  T
Q  400 aaccaa 405  Q
    ||||||    
T  48996146 aaccaa 48996151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 279 - 406
Target Start/End: Original strand, 10218619 - 10218746
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgata 378  Q
    ||||| ||||||||||| ||  |||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||| |||||| ||| ||||||     
T  10218619 attaggggtgtttgcggtgcgttttggttcggttttgagcataaaagtcatctaaacctcaagataaaaaagcatgcggtttggtttgattcagttgatt 10218718  T
Q  379 tttaaaaagtcatccaaaccaaaccaaa 406  Q
    |||| | |||||||||||| ||||||||    
T  10218719 tttatatagtcatccaaacaaaaccaaa 10218746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 286 - 405
Target Start/End: Original strand, 43630525 - 43630644
Alignment:
Q  286 gtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    ||||| |||| || |||||||||| ||||||| |||||| |||||||||||| |||||||||||  |||||||| ||||||||| ||||||| |||||||    
T  43630525 gtgttcgcggtgcggtttggttcgattttgagtataaaagtcatccaaaccgtgagataaaaaaatatgcggtttggtttggtttggttgatttttaaaa 43630624  T
Q  386 agtcatccaaaccaaaccaa 405  Q
    ||||||||||| ||||||||    
T  43630625 agtcatccaaatcaaaccaa 43630644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 6333263 - 6333379
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || |||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||     ||||||||| ||||||| ||||||    
T  6333263 ggtgttcgcggtgcggtttggttcgattttgagcaaaaaagtcatccaaaccgcgagataaaaaagcatgc-----ggtttggtttggttgatttttaaa 6333357  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    |||||||||||| |||||||||    
T  6333358 aagtcatccaaatcaaaccaaa 6333379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 51394665 - 51394781
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||     || |||||||||| ||||||    
T  51394665 ggtgttcgcggtgcagtttggttcagttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtt-----tgattcggttgatttttaaa 51394759  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||||| | | ||||||||||||    
T  51394760 aagtctttccaaccaaaccaaa 51394781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 279 - 371
Target Start/End: Original strand, 31301236 - 31301328
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcg 371  Q
    ||||| ||||||||||| |||||||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||    
T  31301236 attaggggtgtttgcggtgcagtttggtttagttttgagcataaaagtcatccaaaccgcgagataaaaaaacatgcggtttggtttggttcg 31301328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 310 - 405
Target Start/End: Complemental strand, 23937629 - 23937534
Alignment:
Q  310 gttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaa 405  Q
    ||||||||||||||| ||||| ||||  ||||||||||||  |||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  23937629 gttttgagcataaaagtcatctaaactacgagataaaaaaatatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 23937534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 279 - 405
Target Start/End: Complemental strand, 30194118 - 30193991
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaa-gcatgcggttaggtttggttcggttgat 377  Q
    ||||| |||||| |||| || ||||| ||||| ||| || | |||| |||| ||||||| ||||||||||| |||||||||| |||||||||||||||||    
T  30194118 attaggggtgttcgcggtgcggtttgattcgggtttaagtaaaaaagtcattcaaaccgtgagataaaaaaagcatgcggtttggtttggttcggttgat 30194019  T
Q  378 atttaaaaagtcatccaaaccaaaccaa 405  Q
     |||||||||||||||||||||||||||    
T  30194018 ttttaaaaagtcatccaaaccaaaccaa 30193991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 285 - 405
Target Start/End: Original strand, 52344684 - 52344799
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || |||||| | | |||||||||||||| |||||||||||| |||||||||||||||||     ||||||||||| || || ||||||    
T  52344684 ggtgttcgcggtgcggtttgggttgattttgagcataaaagtcatccaaaccgtgagataaaaaagcatgc-----ggtttggttcgattaatttttaaa 52344778  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||    
T  52344779 aagtcatccaaaccaaaccaa 52344799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 285 - 375
Target Start/End: Complemental strand, 48293541 - 48293451
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttg 375  Q
    |||||| |||| |||||||||||||||||||||  ||||| |||||| |||||| || ||||||||||||||||| |||||||||||||||    
T  48293541 ggtgttcgcggtgcagtttggttcggttttgaggttaaaagtcatccgaaccgcaaggtaaaaaagcatgcggtttggtttggttcggttg 48293451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 300 - 397
Target Start/End: Complemental strand, 13690969 - 13690872
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaac 397  Q
    |||||||||| |||| ||||||||| |||||||||||||||||||| ||| ||| | ||| | |||| |||||||||| |||||||||||||||||||    
T  13690969 gtttggttcgattttaagcataaaagtcatccaaaccgcgagataataaaacatacagtttgatttgattcggttgatttttaaaaagtcatccaaac 13690872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 279 - 376
Target Start/End: Complemental strand, 5122526 - 5122429
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttga 376  Q
    ||||| ||||||||||| || ||||||||||||||||||  ||||| ||||  ||||| | |||||||||||||||||||| | ||||||||||||||    
T  5122526 attaggggtgtttgcggtgcggtttggttcggttttgagggtaaaagtcatataaaccacaagataaaaaagcatgcggtttgatttggttcggttga 5122429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 23120393 - 23120272
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||| |||| ||||||   ||||| |||||| |||||| |||||||||||||||||||| ||||||||||| ||||  || |||    
T  23120393 ggtgttcgcggtgcggtttgattcgattttgaaggtaaaagtcatccgaaccgcaagataaaaaagcatgcggtttggtttggttcgattgactttaaaa 23120294  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||  ||||||||||||||||||    
T  23120293 aaaacatccaaaccaaaccaaa 23120272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 286 - 405
Target Start/End: Complemental strand, 23450119 - 23450000
Alignment:
Q  286 gtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||||||||| ||||||| |||||||||||||  ||||| |||||| ||| || ||||||| ||| |||||||| |||||||||||||| |  |||||||    
T  23450119 gtgtttgcggtgcagtttagttcggttttgaggttaaaagtcatccgaactgcaagataaataagtatgcggtttggtttggttcggttaacttttaaaa 23450020  T
Q  386 agtcatccaaaccaaaccaa 405  Q
      | ||||| ||||||||||    
T  23450019 tataatccacaccaaaccaa 23450000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 278 - 406
Target Start/End: Complemental strand, 36106563 - 36106434
Alignment:
Q  278 aattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcgg-ttaggtttggttcggttga 376  Q
    |||||| | |||| |||| || ||||||||||||||||||  ||||| |||||| |||||| |||||||||| ||||||| || ||||||||||||||||    
T  36106563 aattagggatgttcgcggtgcggtttggttcggttttgaggttaaaagtcatccgaaccgcaagataaaaaaacatgcggttttggtttggttcggttga 36106464  T
Q  377 tatttaaaaagtcatccaaaccaaaccaaa 406  Q
      |||||||    |||| ||||||||||||    
T  36106463 cttttaaaataaaatccgaaccaaaccaaa 36106434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 289 - 406
Target Start/End: Original strand, 48338292 - 48338408
Alignment:
Q  289 tttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagt 388  Q
    ||||||| |||||||||||||||||| ||  ||||| |||||| |||||  |||||||||| ||||| ||| ||||||||||||||||  |||||||       
T  48338292 tttgcggtgcagtttggttcggttttaaggttaaaagtcatccgaaccgtaagataaaaaa-catgcagtttggtttggttcggttgacttttaaaataa 48338390  T
Q  389 catccaaaccaaaccaaa 406  Q
     |||||||||||||||||    
T  48338391 aatccaaaccaaaccaaa 48338408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 41260212 - 41260280
Alignment:
Q  278 aattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaa 346  Q
    |||||| |||||||| || || ||||||||||||||||||||||||| |||||| ||||||||||||||    
T  41260212 aattagaggtgtttgtggtgcggtttggttcggttttgagcataaaaatcatcctaaccgcgagataaa 41260280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 20986368 - 20986459
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttga 376  Q
    ||||||||||  || ||||| |||||||||||   ||||| ||||||||||||| ||||||| ||| |||||||| ||||||||||||||||    
T  20986368 ggtgtttgcgatgcggtttgtttcggttttgaagctaaaagtcatccaaaccgcaagataaacaagtatgcggtttggtttggttcggttga 20986459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 402
Target Start/End: Original strand, 45983330 - 45983447
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||||| || |||||||||||||| |||||  |||||| | |||  |||||| |||||||||| ||||||||| |||||| |||||||||  || |||    
T  45983330 ggtgtttgtggtgcagtttggttcggctttgaagataaaagttatctgaaccgcaagataaaaaatcatgcggtttggtttgattcggttgactttaaaa 45983429  T
Q  385 aagtcatccaaaccaaac 402  Q
    |   ||||||||||||||    
T  45983430 ataacatccaaaccaaac 45983447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 311 - 405
Target Start/End: Complemental strand, 8176702 - 8176613
Alignment:
Q  311 ttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaa 405  Q
    ||||||| |||||| |||| ||||| |  ||||||||| |||||||||| |||||||||     ||| |||||||||||||| ||||||||||||    
T  8176702 ttttgaggataaaagtcattcaaactgtaagataaaaacgcatgcggtttggtttggtt-----gatttttaaaaagtcatctaaaccaaaccaa 8176613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 359
Target Start/End: Complemental strand, 32223455 - 32223381
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggtt 359  Q
    |||||| |||| || ||||| ||||||||||||  ||||| ||||||||| ||  ||||||||||||||||||||    
T  32223455 ggtgttcgcggtgcggtttgattcggttttgaggttaaaagtcatccaaatcgaaagataaaaaagcatgcggtt 32223381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 308 - 406
Target Start/End: Original strand, 51907037 - 51907130
Alignment:
Q  308 cggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||| |||| | || |  ||||||||||||||| ||||| |||||||||     ||  ||||||||||||||| ||||||||||||    
T  51907037 cggttttgagcataaaagtcattctaatcaggagataaaaaagcatacggttcggtttggtt-----gacttttaaaaagtcatccgaaccaaaccaaa 51907130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 297 - 385
Target Start/End: Complemental strand, 18536768 - 18536680
Alignment:
Q  297 gcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    ||||||| ||||||||||||   ||||| ||||||||||| | |||||||||||||  | ||| || |||||||||||||  |||||||    
T  18536768 gcagttttgttcggttttgaagctaaaattcatccaaaccacaagataaaaaagcacacagtttgggttggttcggttgacttttaaaa 18536680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 54274118 - 54274066
Alignment:
Q  320 taaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcgg 372  Q
    |||||||||||| |||||| ||||| |||| ||||||||| ||||||||||||    
T  54274118 taaaactcatccgaaccgcaagatagaaaatcatgcggtttggtttggttcgg 54274066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 7e-42; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 285 - 400
Target Start/End: Complemental strand, 35040346 - 35040231
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  35040346 ggtgttcgcggtgcggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggtttggttgatttttaaa 35040247  T
Q  385 aagtcatccaaaccaa 400  Q
    ||||||||||||||||    
T  35040246 aagtcatccaaaccaa 35040231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 280 - 406
Target Start/End: Complemental strand, 10494522 - 10494396
Alignment:
Q  280 ttagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatat 379  Q
    |||| ||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||| |    
T  10494522 ttaggggtgtttgcggtgcggtttggtttggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatggggtttgatttggttcggttgattt 10494423  T
Q  380 ttaaaaagtcatccaaaccaaaccaaa 406  Q
    |||||||||||||||||| ||||||||    
T  10494422 ttaaaaagtcatccaaactaaaccaaa 10494396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 300 - 405
Target Start/End: Original strand, 10590812 - 10590917
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  10590812 gtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatcccaacca 10590911  T
Q  400 aaccaa 405  Q
    ||||||    
T  10590912 aaccaa 10590917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 5874288 - 5874167
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  5874288 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaa 5874189  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||    
T  5874188 aagtcatccaaaccaaaccaaa 5874167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 279 - 404
Target Start/End: Original strand, 15859666 - 15859791
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgata 378  Q
    ||||| |||||| |||| || ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| |||||| ||||||||||     
T  15859666 attaggggtgttcgcggtgccgtttggttcggttttgagcataaaagtcttccaaaccgcgagattaaaaagcatgcggtttggtttgattcggttgatt 15859765  T
Q  379 tttaaaaagtcatccaaaccaaacca 404  Q
    |||||| |||||||||||||||||||    
T  15859766 tttaaatagtcatccaaaccaaacca 15859791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 278 - 405
Target Start/End: Original strand, 12270496 - 12270623
Alignment:
Q  278 aattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgat 377  Q
    |||||| |||||| |||| || ||||||||||||||  | ||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  12270496 aattaggggtgttcgcggtgcggtttggttcggtttcaaacataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgat 12270595  T
Q  378 atttaaaaagtcatccaaaccaaaccaa 405  Q
     |||||||||||||||||||||||||||    
T  12270596 ttttaaaaagtcatccaaaccaaaccaa 12270623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 300 - 406
Target Start/End: Complemental strand, 13810990 - 13810884
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||||||||||||||||    
T  13810990 gtttggtttggttttgagcaaaaaagtcatccaaaccgcgagataaaaaagcatacggtttggtttggttcagttgatttttaaaaagtcatccaaacca 13810891  T
Q  400 aaccaaa 406  Q
    |||||||    
T  13810890 aaccaaa 13810884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 278 - 405
Target Start/End: Complemental strand, 5288047 - 5287920
Alignment:
Q  278 aattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgat 377  Q
    |||||| |||||| |||| || |||||||||||||||||||||  || |||||||||| |||||||||| || ||||| ||| |||||||||||||||||    
T  5288047 aattagaggtgttcgcggtgcggtttggttcggttttgagcatttaagtcatccaaactgcgagataaataaacatgcagtttggtttggttcggttgat 5287948  T
Q  378 atttaaaaagtcatccaaaccaaaccaa 405  Q
     ||||||||||||||||||| |||||||    
T  5287947 ttttaaaaagtcatccaaacgaaaccaa 5287920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 25136733 - 25136839
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    |||||||||||||||||||||| || | |||||||| | || |||||||||||||||||| |||||||||||||||   |||||||||||||||||||||    
T  25136733 gtttggttcggttttgagcatacaagtgatccaaacagtgaaataaaaaagcatgcggttcggtttggttcggttggattttaaaaagtcatccaaacca 25136832  T
Q  400 aaccaaa 406  Q
    |||||||    
T  25136833 aaccaaa 25136839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 33550281 - 33550387
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||| ||||||||||||||||||| |||||||||||| | ||||||||| ||||  |||  |||||||||||||||| |||||||||||||||||||||    
T  33550281 gtttgattcggttttgagcataaaagtcatccaaaccgagggataaaaaaacatgatgtttagtttggttcggttgatttttaaaaagtcatccaaacca 33550380  T
Q  400 aaccaaa 406  Q
    |||||||    
T  33550381 aaccaaa 33550387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 300 - 405
Target Start/End: Complemental strand, 10391143 - 10391037
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatat-ttaaaaagtcatccaaacc 398  Q
    ||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||| ||||||||||  ||||| | | |||||||||||||||||    
T  10391143 gtttggttcggttttgagcataaaagtcattcgaaccgcgagataaaaaagcatgctgtttggtttggttcacttgatttctaaaaaagtcatccaaacc 10391044  T
Q  399 aaaccaa 405  Q
    |||||||    
T  10391043 aaaccaa 10391037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 13802066 - 13801997
Alignment:
Q  337 gcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  13802066 gcgagataaaaaagcatacggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaaccaaa 13801997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 28710019 - 28709966
Alignment:
Q  59 ctaattgtttacaccgattttcatccttctaaatattgttttgtacctataaca 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  28710019 ctaattgtttacaccgattttcatcattctaaatattgttttgtacctgtaaca 28709966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 333 - 376
Target Start/End: Original strand, 30752525 - 30752568
Alignment:
Q  333 aaccgcgagataaaaaagcatgcggttaggtttggttcggttga 376  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  30752525 aaccgcaagataaaaaagcatgcggtttggtttggttcggttga 30752568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 285 - 374
Target Start/End: Complemental strand, 892477 - 892388
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggtt 374  Q
    |||||| |||| || |||||||||  |||| ||  ||||| |||||| |||||| | |||||||| ||||||||| ||||||||||||||    
T  892477 ggtgttcgcggtgcggtttggttcaattttaaggctaaaagtcatccgaaccgcaaaataaaaaaacatgcggtttggtttggttcggtt 892388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 297 - 374
Target Start/End: Original strand, 9686016 - 9686093
Alignment:
Q  297 gcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggtt 374  Q
    ||||||||||||| |||||||  | ||| |||||  |||||| ||||||| ||| |||||||| ||||||||||||||    
T  9686016 gcagtttggttcgattttgaggctcaaagtcatctgaaccgcaagataaataagtatgcggtttggtttggttcggtt 9686093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 286 - 402
Target Start/End: Original strand, 6266851 - 6266967
Alignment:
Q  286 gtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    ||||| |||| || ||||||| ||||||||||  ||| | |||||| |||||  | |||||||| ||||||||| |||||||| |||||||  |||||||    
T  6266851 gtgttcgcggtgcggtttggtacggttttgaggttaatagtcatccgaaccgtaaaataaaaaaacatgcggtttggtttggtacggttgacttttaaaa 6266950  T
Q  386 agtcatccaaaccaaac 402  Q
     |  | |||||||||||    
T  6266951 tgaaaaccaaaccaaac 6266967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 297 - 385
Target Start/End: Original strand, 22413796 - 22413884
Alignment:
Q  297 gcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||||||| || |||||||||  ||||| |||||| ||||   ||||||| ||| |||||||| ||||||||||||||||  |||||||    
T  22413796 gcagtttgatttggttttgaggttaaaagtcatccgaaccagaagataaataagtatgcggtttggtttggttcggttgacttttaaaa 22413884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 3e-41; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 280 - 406
Target Start/End: Complemental strand, 16529641 - 16529515
Alignment:
Q  280 ttagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatat 379  Q
    |||| |||||| |||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||| |    
T  16529641 ttaggggtgttcgcggtgcggtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgccgtttggtttggttcggttgattt 16529542  T
Q  380 ttaaaaagtcatccaaaccaaaccaaa 406  Q
    |||||||||||| ||||||||||||||    
T  16529541 ttaaaaagtcattcaaaccaaaccaaa 16529515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 1161878 - 1161758
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    ||||||||||  || |||||||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| ||||||||| ||||||| ||||||    
T  1161878 ggtgtttgcgatgcggtttggttcggttttgagcagaaaagtcatccgaaccgcgagataaaaaagcatgtggtttggtttggtttggttgatttttaaa 1161779  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||    
T  1161778 aagtcatccaaaccaaaccaa 1161758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 285 - 401
Target Start/End: Complemental strand, 51252551 - 51252435
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||    
T  51252551 ggtgttcgcggtgcggtttggttcgattttgagcataaaagtcatccaaaccgcgagataaaaaagcatgtggtttggtttggttgggttgatttttaaa 51252452  T
Q  385 aagtcatccaaaccaaa 401  Q
    |||||||||||||||||    
T  51252451 aagtcatccaaaccaaa 51252435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 280 - 406
Target Start/End: Original strand, 20493690 - 20493816
Alignment:
Q  280 ttagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatat 379  Q
    |||| |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||| ||||||||| ||||||||||||||||| |    
T  20493690 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaaacatgcggtttggtttggttcggttgattt 20493789  T
Q  380 ttaaaaagtcatccaaaccaaaccaaa 406  Q
    |||||||||||||||||||||||||||    
T  20493790 ttaaaaagtcatccaaaccaaaccaaa 20493816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 32954000 - 32954105
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||||||||||||||| ||||||| |||||||||||  ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  32954000 gtttggttcggttttgaacataaaagtcatccaaacct-gagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaacca 32954098  T
Q  400 aaccaaa 406  Q
    |||||||    
T  32954099 aaccaaa 32954105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 8211225 - 8211346
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || |||||||| |||||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  8211225 ggtgttcgcggtgcggtttggtttggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaa 8211324  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||    
T  8211325 aagtcatccaaaccaaaccaaa 8211346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 5155479 - 5155358
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || |||||||| |||||  ||||||| | ||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||    
T  5155479 ggtgttcgcggtgcggtttggtttggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcgatttggtttggttcggttgatttttaaa 5155380  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||    
T  5155379 aagtcatccaaaccaaaccaaa 5155358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 289 - 406
Target Start/End: Original strand, 29388983 - 29389100
Alignment:
Q  289 tttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagt 388  Q
    ||||||| || |||||||||| ||||||||| |||| |||||||||||| ||||||||||||||||||||| | ||||||| | ||||| ||||||||||    
T  29388983 tttgcggtgcggtttggttcgattttgagcaaaaaagtcatccaaaccgtgagataaaaaagcatgcggtttgatttggtttgattgatttttaaaaagt 29389082  T
Q  389 catccaaaccaaaccaaa 406  Q
    ||||||||||||||||||    
T  29389083 catccaaaccaaaccaaa 29389100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 300 - 406
Target Start/End: Complemental strand, 39256757 - 39256651
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||||||| |||||||||| |||| |||| | ||| |||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  39256757 gtttggttctgttttgagcacaaaagtcattcgaactgcgagataaaaaagcatgcggtttagtttggttcggttgatttttaaaaagtcatccaaacca 39256658  T
Q  400 aaccaaa 406  Q
    |||||||    
T  39256657 aaccaaa 39256651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 301 - 405
Target Start/End: Original strand, 33474410 - 33474514
Alignment:
Q  301 tttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaa 400  Q
    ||||||||| ||||||||| |||| |||||||||| | |||||||||||||||||||||  |||||||||||||||| || |||||||||||||||||||    
T  33474410 tttggttcgattttgagcaaaaaaatcatccaaactgtgagataaaaaagcatgcggtttagtttggttcggttgattttaaaaaagtcatccaaaccaa 33474509  T
Q  401 accaa 405  Q
    |||||    
T  33474510 accaa 33474514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 288 - 406
Target Start/End: Original strand, 45691746 - 45691865
Alignment:
Q  288 gtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaag-catgcggttaggtttggttcggttgatatttaaaaa 386  Q
    |||||||| || ||||| ||| |||||||||| |||  ||||||||||||||| ||||||||  ||||||||| ||||||||||||||||| ||||||||    
T  45691746 gtttgcggtgcggtttgattcagttttgagcaaaaatgtcatccaaaccgcgaaataaaaaaaacatgcggtttggtttggttcggttgatttttaaaaa 45691845  T
Q  387 gtcatccaaaccaaaccaaa 406  Q
    ||||||||||| ||||||||    
T  45691846 gtcatccaaactaaaccaaa 45691865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 300 - 406
Target Start/End: Complemental strand, 33910903 - 33910796
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatcc-aaacc 398  Q
    ||||||||| | ||||||||||||| |||||||||  |||||||||||||||||| |||| | ||||||||||||||| |||||||| |||||| |||||    
T  33910903 gtttggttcaggtttgagcataaaagtcatccaaaatgcgagataaaaaagcatgtggtttgatttggttcggttgatttttaaaaattcatccaaaacc 33910804  T
Q  399 aaaccaaa 406  Q
    ||||||||    
T  33910803 aaaccaaa 33910796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 44918509 - 44918610
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    |||||||||| |||||||||||||| ||| |||||| || ||||||||||||||||     ||||||||||||||||| ||||||||||||||||||| |    
T  44918509 gtttggttcgattttgagcataaaagtcacccaaactgcaagataaaaaagcatgc-----ggtttggttcggttgatttttaaaaagtcatccaaacga 44918603  T
Q  400 aaccaaa 406  Q
    |||||||    
T  44918604 aaccaaa 44918610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 286 - 406
Target Start/End: Original strand, 11898958 - 11899073
Alignment:
Q  286 gtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    ||||| |||| || ||||| |||||||||||||| |||| |||||||||||||| ||||||||| ||||      ||||||||||||||||| |||||||    
T  11898958 gtgttcgcggtgcggtttgattcggttttgagcaaaaaagtcatccaaaccgcgcgataaaaaaacatg-----tggtttggttcggttgatttttaaaa 11899052  T
Q  386 agtcatccaaaccaaaccaaa 406  Q
    | |||||||||||||||||||    
T  11899053 aatcatccaaaccaaaccaaa 11899073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 301 - 385
Target Start/End: Complemental strand, 36203563 - 36203479
Alignment:
Q  301 tttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||||| | ||||||||||||||  |||||||    
T  36203563 tttggttcggttttgaggttaaaagtcatccaaaccgcaagataaaaaagcatgcggtttgatttggttcggttgacttttaaaa 36203479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 285 - 401
Target Start/End: Complemental strand, 42789739 - 42789628
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||| || |||| ||||||||| |||| |||||||||||||||||||||||||      ||||||||| |||||| ||||||    
T  42789739 ggtgttcgcggtgcggtttggtacgattttaagcataaaagtcattcaaaccgcgagataaaaaagcatgc-----agtttggttcagttgatttttaaa 42789645  T
Q  385 aagtcatccaaaccaaa 401  Q
    |||||||||||||||||    
T  42789644 aagtcatccaaaccaaa 42789628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 32910488 - 32910414
Alignment:
Q  302 ttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttga 376  Q
    |||||||||||||||| |||||| |||||||||| || |||||||||| ||||| ||| ||||||||||||||||    
T  32910488 ttggttcggttttgaggataaaagtcatccaaactgcaagataaaaaaacatgcagtttggtttggttcggttga 32910414  T

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Target: chr1; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 280 - 385
Target Start/End: Complemental strand, 21685683 - 21685578
Alignment:
Q  280 ttagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatat 379  Q
    |||| ||||||||||| |||||||||||||||||| ||  ||||| |||||  |||||| ||||| ||| |||||||||| |||||||||| |||||  |    
T  21685683 ttaggggtgtttgcggtgcagtttggttcggttttaaggctaaaagtcatctgaaccgcaagatacaaatgcatgcggtttggtttggttcagttgactt 21685584  T
Q  380 ttaaaa 385  Q
    ||||||    
T  21685583 ttaaaa 21685578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 280 - 385
Target Start/End: Complemental strand, 35980528 - 35980423
Alignment:
Q  280 ttagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatat 379  Q
    |||| ||||||||||| || ||||||||||||||||||  ||||| |||||| |||||| || |||||||||||| |||| ||||| ||||| ||||  |    
T  35980528 ttaggggtgtttgcggtgcggtttggttcggttttgaggctaaaagtcatccgaaccgcaaggtaaaaaagcatgtggtttggttttgttcgattgactt 35980429  T
Q  380 ttaaaa 385  Q
    ||||||    
T  35980428 ttaaaa 35980423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 285 - 411
Target Start/End: Complemental strand, 27507627 - 27507501
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || |||||||||||||||||| |||||| |||||| |||||| ||||||| ||| ||||  || ||||| ||||||||||  ||||||    
T  27507627 ggtgttcgcggtgcggtttggttcggttttgagaataaaagtcatccgaaccgcaagataaataagtatgcaatttggtttagttcggttgacttttaaa 27507528  T
Q  385 aagtcatccaaaccaaaccaaagatgt 411  Q
    |    ||||||| |||||||| |||||    
T  27507527 ataaaatccaaatcaaaccaatgatgt 27507501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 285 - 385
Target Start/End: Complemental strand, 2490164 - 2490064
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    ||||||||||| ||||||||||||| |||||||  ||||| | |||| |||||| ||||||| ||| ||||| || |||||||||| |||||  ||||||    
T  2490164 ggtgtttgcggtgcagtttggttcgattttgaggctaaaagttatccgaaccgcaagataaataagtatgcgatttggtttggttcagttgacttttaaa 2490065  T
Q  385 a 385  Q
    |    
T  2490064 a 2490064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 285 - 376
Target Start/End: Complemental strand, 8165687 - 8165596
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttga 376  Q
    ||||||||||| || |||| |||| |||||||   ||||| |||||| ||||||  |||||| |||||||||||| |||| |||||||||||    
T  8165687 ggtgtttgcggtgcggtttagttcagttttgaaggtaaaaatcatccgaaccgcaggataaagaagcatgcggtttggttcggttcggttga 8165596  T

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Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 278 - 385
Target Start/End: Complemental strand, 40095564 - 40095457
Alignment:
Q  278 aattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgat 377  Q
    |||||| |||||| |||| || ||||||||||||||||||  ||||| | |||| |||||| ||||||| ||  |||||||| || ||| ||||||| ||    
T  40095564 aattaggggtgttcgcggtgcggtttggttcggttttgaggttaaaagttatccgaaccgcaagataaataaatatgcggtttggcttgtttcggtttat 40095465  T
Q  378 atttaaaa 385  Q
     |||||||    
T  40095464 ttttaaaa 40095457  T

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Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 377
Target Start/End: Original strand, 12973501 - 12973598
Alignment:
Q  280 ttagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgat 377  Q
    |||| |||||| |||| || |||||||||||||||||   | ||| |||||| |||||| ||||||| ||  |||||||| ||||||||| |||||||    
T  12973501 ttaggggtgttcgcggtgcggtttggttcggttttgaagctgaaagtcatccgaaccgcaagataaataaatatgcggtttggtttggtttggttgat 12973598  T

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Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 297 - 385
Target Start/End: Original strand, 34914092 - 34914180
Alignment:
Q  297 gcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    ||||||||||||| |||||||   |||| |||||||||| |||| ||||||||| |||| ||| |||||| || ||||||  |||||||    
T  34914092 gcagtttggttcgattttgaggtgaaaagtcatccaaactgcgaaataaaaaagtatgcagtttggtttgctttggttgacttttaaaa 34914180  T

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Target: scaffold0013 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 128583 - 128704
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    ||||||||||| || |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||| |||||| ||||||    
T  128583 ggtgtttgcggtgcggtttggttcgattttgagcataaaagtcatccaaaccgcaagataaaaaagcatgtggtttggtttggttctgttgatttttaaa 128682  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    |||||||||||||| |||||||    
T  128683 aagtcatccaaaccgaaccaaa 128704  T

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Target: scaffold0013; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 105976 - 106097
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || |||||||||| ||||||||| |||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||    
T  105976 ggtgttcgcggtgcggtttggttcgattttgagcaaaaaagtcatccaaaccgcaagataaaaaagcatgtggtttggtttggttcggttgatttttaaa 106075  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    | |||||||||||| |||||||    
T  106076 atgtcatccaaaccgaaccaaa 106097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 3e-38; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 11917352 - 11917473
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  11917352 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaa 11917451  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||    
T  11917452 aagtcatccaaaccaaaccaaa 11917473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 15068407 - 15068528
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||    
T  15068407 ggtgttcgcggtgcggtttggttcggttttaagcataataatcatccaaaccgcgagagaaaaaagcatgcgatttggtttggttcggttgatttttaaa 15068506  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||||||||||    
T  15068507 aagtcatccaaaccaaaccaaa 15068528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 333413 - 333293
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    ||||||||||| || |||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||  | ||||||||||| ||||| ||||||    
T  333413 ggtgtttgcggtgcggtttggttcgattttgagcataaaagtcatccaaaccgcgagatagaaaagcatgcgaattggtttggttcgattgatttttaaa 333314  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||    
T  333313 aagtcatccaaaccaaaccaa 333293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 27886552 - 27886432
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  27886552 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaa 27886453  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||    
T  27886452 aagtcatccaaaccaaaccaa 27886432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 297 - 406
Target Start/End: Original strand, 38433656 - 38433765
Alignment:
Q  297 gcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaa 396  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |||||||||  |||||||||||||||| ||||||||||| ||||||    
T  38433656 gcagtttagttcggttttgagcataaaagtcattcaaaccgcgagataaaaaatcatgcggtttagtttggttcggttgatttttaaaaagtcctccaaa 38433755  T
Q  397 ccaaaccaaa 406  Q
    ||||||||||    
T  38433756 ccaaaccaaa 38433765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 300 - 405
Target Start/End: Original strand, 42544620 - 42544725
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  42544620 gtttgcttcggttttgagcaaaaaagtcatctaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaagaagtcatccaaacca 42544719  T
Q  400 aaccaa 405  Q
    ||||||    
T  42544720 aaccaa 42544725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 281 - 405
Target Start/End: Complemental strand, 2227024 - 2226900
Alignment:
Q  281 tagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatt 380  Q
    |||||||||| |||| |  |||||||||||||||||||||||||  |||||||||||||||||||||||| | | |||| ||||||||||||||||| ||    
T  2227024 tagtggtgttcgcggagtggtttggttcggttttgagcataaaaaacatccaaaccgcgagataaaaaagaacgtggtttggtttggttcggttgatttt 2226925  T
Q  381 taaaaagtcatccaaaccaaaccaa 405  Q
    |||||| ||||||||||||||||||    
T  2226924 taaaaactcatccaaaccaaaccaa 2226900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 17085373 - 17085253
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    ||||||||||| || ||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||  |||||||||||||||| ||||||    
T  17085373 ggtgtttgcggtgcggtttggttcagttttgagcataaaagtcatccaaaccacgagataaaaaagcatgcgatttagtttggttcggttgatttttaaa 17085274  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    ||||||||| || ||||||||    
T  17085273 aagtcatcccaatcaaaccaa 17085253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 277 - 406
Target Start/End: Original strand, 701158 - 701288
Alignment:
Q  277 caattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttga 376  Q
    ||||||| ||||||||||| || ||||||||||||||  ||||||| | ||||||||||||||||| |||||| |||| |||| ||||||||||||||||    
T  701158 caattaggggtgtttgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaaacatgtggtttggtttggttcggttga 701257  T
Q  377 -tatttaaaaagtcatccaaaccaaaccaaa 406  Q
     | ||||||||||||||||||||||||||||    
T  701258 ttttttaaaaagtcatccaaaccaaaccaaa 701288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 308 - 406
Target Start/End: Complemental strand, 36177218 - 36177120
Alignment:
Q  308 cggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaaa 406  Q
    |||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||    
T  36177218 cggtttggagcataaaagtcatccaaaccgcgagataaaaatgcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaacaaaaccaaa 36177120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 8408937 - 8409058
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||    
T  8408937 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagtatgcggtttggtttggttcggttgatttttaaa 8409036  T
Q  385 aagtcatccaaaccaaaccaaa 406  Q
    |||||| |||||||||||||||    
T  8409037 aagtcacccaaaccaaaccaaa 8409058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 30265927 - 30265807
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || |||||||| |||||||||||||||| ||||| ||||||| |||||||||| ||||| ||| ||||||||||||||||| ||||||    
T  30265927 ggtgttcgcggtgcggtttggtttggttttgagcataaaaatcatctaaaccgcaagataaaaaaacatgcagtttggtttggttcggttgatttttaaa 30265828  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||||||| ||||||||||||    
T  30265827 aagtcatcaaaaccaaaccaa 30265807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 302 - 405
Target Start/End: Complemental strand, 12166282 - 12166180
Alignment:
Q  302 ttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaa 401  Q
    |||||||||||| |||||||||| ||||| ||| |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  12166282 ttggttcggttt-gagcataaaagtcatcaaaatcgcgagataaaaaagcatgcagtttggtttggttcggttgatttttaaaaagtcatccaaaccaaa 12166184  T
Q  402 ccaa 405  Q
    ||||    
T  12166183 ccaa 12166180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 287 - 405
Target Start/End: Original strand, 30001960 - 30002078
Alignment:
Q  287 tgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaa 386  Q
    |||| |||| || ||||||||||||||  ||||||| | | ||||||||||||||| |||||||||||||||| ||||||||||||||| | ||||||||    
T  30001960 tgttcgcggtgcggtttggttcggtttcaagcataataataatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgttttttaaaaa 30002059  T
Q  387 gtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||    
T  30002060 gtcatccaaaccaaaccaa 30002078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 667750 - 667630
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || ||||||||||||||  ||||||| | ||||||||||||||||| | |||| ||| ||||| ||||||||||||||||| ||||||    
T  667750 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaaacatacggtttggtttggttcggttgatttttaaa 667651  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||    
T  667650 aagtcatccaaaccaaaccaa 667630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 36103748 - 36103626
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagc-atgcggttaggtttggttcggttgatatttaa 383  Q
    |||||| |||| || |||||||||||||||||||||||||  ||||||||  | |||||||||||   |||||||| |||||||||| |||||| |||||    
T  36103748 ggtgttcgcggtgcggtttggttcggttttgagcataaaatacatccaaagtgtgagataaaaaaaatatgcggtttggtttggttcagttgatttttaa 36103649  T
Q  384 aaagtcatccaaaccaaaccaaa 406  Q
    |||||||||||||||||||||||    
T  36103648 aaagtcatccaaaccaaaccaaa 36103626  T

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Target: chr5; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 278 - 406
Target Start/End: Original strand, 9160920 - 9161051
Alignment:
Q  278 aattagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtt-----tggttcgg 372  Q
    |||||| |||||| |||| || |||||||||||||||||| | |||| |||| |||||||||||||||||| |||||||||| ||||     ||||||||    
T  9160920 aattagaggtgttcgcggtgcggtttggttcggttttgagaa-aaaagtcattcaaaccgcgagataaaaa-gcatgcggtttggtttggtttggttcgg 9161017  T
Q  373 ttgatatttaaaaagtcatccaaaccaaaccaaa 406  Q
    ||||| ||||||||||||||||||||||||||||    
T  9161018 ttgatttttaaaaagtcatccaaaccaaaccaaa 9161051  T

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Target: chr5; HSP #18
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 12681200 - 12681085
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaa 384  Q
    |||||| |||| || |||| |||||||||||||||||||| |||| || |||||||||||||||||||||      ||||||||||||||||| ||||||    
T  12681200 ggtgttcgcggtgcggtttagttcggttttgagcataaaagtcattcagaccgcgagataaaaaagcatg-----tggtttggttcggttgatttttaaa 12681106  T
Q  385 aagtcatccaaaccaaaccaa 405  Q
    || ||||||||||||||||||    
T  12681105 aattcatccaaaccaaaccaa 12681085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 285 - 375
Target Start/End: Complemental strand, 27572181 - 27572091
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttg 375  Q
    ||||||||||| || ||||||||||||||||||  ||||| |||||| |||||| || ||||||||||||||||| |||||||||||||||    
T  27572181 ggtgtttgcggtgcggtttggttcggttttgaggttaaaagtcatccgaaccgcaaggtaaaaaagcatgcggtttggtttggttcggttg 27572091  T

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Target: chr5; HSP #20
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 35358947 - 35359004
Alignment:
Q  349 agcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaaa 406  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35358947 agcatgcggtttggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaaa 35359004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 306 - 406
Target Start/End: Complemental strand, 9988970 - 9988875
Alignment:
Q  306 ttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaa 405  Q
    ||||||||||| ||||||| ||||||||||| |||||||||||| |||| ||||     || |||||||||| |||||||||||||||||| ||||||||    
T  9988970 ttcggttttgaacataaaagtcatccaaaccacgagataaaaaaacatgtggtt-----tgattcggttgatttttaaaaagtcatccaaatcaaaccaa 9988876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 23780771 - 23780839
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcat 353  Q
    |||||| |||| || ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  23780771 ggtgttcgcggtgcggtttggttcggttttaagcataaaagtcatccaaaccgcgagataaaaaagcat 23780839  T

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Target: chr5; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 23867724 - 23867792
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcat 353  Q
    |||||| |||| || ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  23867724 ggtgttcgcggtgcggtttggttcggttttaagcataaaagtcatccaaaccgcgagataaaaaagcat 23867792  T

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Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 10174096 - 10174152
Alignment:
Q  349 agcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaa 405  Q
    ||||||||||| ||||| ||| ||||||| |||||||||| ||||||||||||||||    
T  10174096 agcatgcggtttggtttcgtttggttgatttttaaaaagttatccaaaccaaaccaa 10174152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 294 - 385
Target Start/End: Original strand, 2588930 - 2589021
Alignment:
Q  294 ggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||||||||||||||| |||||||  ||||| ||||   |||||  |||||||||| ||||||||| ||||||||| ||||||  |||||||    
T  2588930 ggcgcagtttggttcgattttgagactaaaagtcatttgaaccgtaagataaaaaaacatgcggtttggtttggtttggttgacttttaaaa 2589021  T

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Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 32521280 - 32521237
Alignment:
Q  363 tttggttcggttgatatttaaaaagtcatccaaaccaaaccaaa 406  Q
    ||||||||||||||| |||||||| |||||||||||||||||||    
T  32521280 tttggttcggttgatttttaaaaattcatccaaaccaaaccaaa 32521237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 300 - 385
Target Start/End: Original strand, 25495046 - 25495131
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    ||||||||||||||||||  ||||| ||||| ||||||| | ||||| ||| |||| ||| |||||  |||||||||| |||||||    
T  25495046 gtttggttcggttttgaggctaaaagtcatctaaaccgcaacataaataagtatgcagtttggtttttttcggttgatttttaaaa 25495131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 385
Target Start/End: Complemental strand, 34881453 - 34881360
Alignment:
Q  292 gcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||| |||||||  ||| ||||||||  ||||| ||||||||||| |||||||||||||||  ||||| ||||| |||| |||||  |||||||    
T  34881453 gcggtgcagtttaattcagttttgaggctaaaagtcatccaaaccacgagataaaaaagcaaacggtttggtttagttcagttgacttttaaaa 34881360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 385
Target Start/End: Original strand, 40692443 - 40692541
Alignment:
Q  286 gtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaa 385  Q
    |||||||||| ||  |||| ||||||||||||  || || |||| ||||| || |||||||| |||||||| || ||||||||||||||||  |||||||    
T  40692443 gtgtttgcggtgcgatttgattcggttttgaggctagaagtcattcaaactgcaagataaaa-agcatgcgatttggtttggttcggttgacttttaaaa 40692541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 300 - 406
Target Start/End: Complemental strand, 1048833 - 1048728
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagtcatccaaacca 399  Q
    ||||||||||| |||||| |||||| ||||||||||    |||||||||| ||||||||| |||||||| || ||||  ||| |||    ||||||||||    
T  1048833 gtttggttcggctttgagaataaaaatcatccaaacata-agataaaaaaacatgcggtttggtttggtccgattgacttttgaaataaaatccaaacca 1048735  T
Q  400 aaccaaa 406  Q
    |||||||    
T  1048734 aaccaaa 1048728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 10090267 - 10090341
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggtt 374  Q
    ||||||||||||||||||  ||||| |||||  |||||| ||||||| ||| |||||||| | ||| ||||||||    
T  10090267 gtttggttcggttttgaggctaaaagtcatcagaaccgcaagataaataagtatgcggtttgatttagttcggtt 10090341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 34111893 - 34111843
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaag 350  Q
    ||||| ||||||||||| ||||||| |||||  ||||||||||||||||||    
T  34111893 gtttgtttcggttttgaacataaaagtcatcataaccgcgagataaaaaag 34111843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 279 - 405
Target Start/End: Complemental strand, 6025 - 5899
Alignment:
Q  279 attagtggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgata 378  Q
    ||||| |||||| |||| || |||||||||| |||  ||||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||     
T  6025 attaggggtgttcgcggtgcggtttggttcgatttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatt 5926  T
Q  379 tttaaaaagtcatccaaaccaaaccaa 405  Q
    |||||||||||||||||||||||||||    
T  5925 tttaaaaagtcatccaaaccaaaccaa 5899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 40721 - 40590
Alignment:
Q  285 ggtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgc----------ggttaggtttggttcggtt 374  Q
    |||||| |||| || ||||||||||||||||||||||| | |||||||||||| ||||||||||  |||||          |||| ||||||||||||||    
T  40721 ggtgttcgcggtgcggtttggttcggttttgagcataatagtcatccaaaccgtgagataaaaactcatgcggtttggtttggtttggtttggttcggtt 40622  T
Q  375 gatatttaaaaagtcatccaaaccaaaccaaa 406  Q
    ||| ||||||||||||||||||||||||||||    
T  40621 gatttttaaaaagtcatccaaaccaaaccaaa 40590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 289 - 406
Target Start/End: Original strand, 25814 - 25930
Alignment:
Q  289 tttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgatatttaaaaagt 388  Q
    ||||||| |||||||||||||||||| ||  ||||| |||||| |||||  |||||||||| ||||| ||| ||||||||||||||||  |||||||       
T  25814 tttgcggtgcagtttggttcggttttaaggttaaaagtcatccgaaccgtaagataaaaaa-catgcagtttggtttggttcggttgacttttaaaataa 25912  T
Q  389 catccaaaccaaaccaaa 406  Q
     |||||||||||||||||    
T  25913 aatccaaaccaaaccaaa 25930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 286 - 376
Target Start/End: Original strand, 14470 - 14560
Alignment:
Q  286 gtgtttgcggcgcagtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttga 376  Q
    |||||||||| || ||||||||| |||||||   ||||| |||||| |||||| ||||||||||||||||| || |||||||||| |||||    
T  14470 gtgtttgcggtgcggtttggttcagttttgaagttaaaagtcatccgaaccgcaagataaaaaagcatgcgatttggtttggttcagttga 14560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 1120 - 1196
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgat 377  Q
    ||||||||||||||||||  ||||| |||||| |||||| |||||||||| |||| |||| ||| |||||||||||||    
T  1120 gtttggttcggttttgaggctaaaagtcatccgaaccgcaagataaaaaa-catgtggtttggtgtggttcggttgat 1196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 7689 - 7765
Alignment:
Q  300 gtttggttcggttttgagcataaaactcatccaaaccgcgagataaaaaagcatgcggttaggtttggttcggttgat 377  Q
    ||||||||||||||||||  ||||| |||||| |||||| |||||||||| |||| |||| ||| |||||||||||||    
T  7689 gtttggttcggttttgaggctaaaagtcatccgaaccgcaagataaaaaa-catgtggtttggtgtggttcggttgat 7765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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