View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4662-Insertion-2 (Length: 454)
Name: NF4662-Insertion-2
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Original strand, 22042320 - 22042712
Alignment:
| Q |
8 |
aatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggtttatggatcttaaaggaaaagaagatgagttgcttacaaattttgaa |
107 |
Q |
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| T |
22042320 |
aatcttatatgggaatactatcgcgatatttactttggacacaggaaagtggtt-atggatcttaaaggaaaagaagatgagttgcttacaaattttgaa |
22042418 |
T |
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| Q |
108 |
taaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccacatttgctcaagaaatacaaaccgaaa |
207 |
Q |
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| T |
22042419 |
aaaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccacatttgctcaagaaatacaaaccgaaa |
22042518 |
T |
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| Q |
208 |
tctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaaccattcgcaaggtaattgcaattgt |
307 |
Q |
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| T |
22042519 |
tctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaaccattcgcaaggtaactgcaattgt |
22042618 |
T |
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| Q |
308 |
t-agaagaatgagaattcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggtatgatttattcaattgca |
400 |
Q |
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| T |
22042619 |
taagaagaatgagaatgcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggtatgatttattcaattgca |
22042712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 2425096 - 2424704
Alignment:
| Q |
8 |
aatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggtttatggatcttaaaggaaaagaagatgagttgcttacaaattttgaa |
107 |
Q |
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| T |
2425096 |
aatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggct-acgcatcttaaaggaaaagaagatgtgttgcttacggatttcgaa |
2424998 |
T |
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| Q |
108 |
taaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccacatttgctcaagaaatacaaaccgaaa |
207 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2424997 |
aaaatcgcggaatctgcttttctcatggttgtagtatttgcactagctgtaacaaagcacaaattgagttccaaatttgctcaagaaatacaaaccgaag |
2424898 |
T |
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| Q |
208 |
tctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaaccattcgcaaggtaattgcaattgt |
307 |
Q |
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| T |
2424897 |
tctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgttcgcttgccagagtatatggaaaccattcgcaaggtaattgcaagtgt |
2424798 |
T |
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| Q |
308 |
t-agaagaatgagaattcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggtatgatttattcaattgca |
400 |
Q |
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| T |
2424797 |
taacaagaatgagaatgcttgtaccttttttgtgaactccataccgtcttatggcgacttgacaaatgggccaggtatgatttattcaattgca |
2424704 |
T |
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