View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4662-Insertion-4 (Length: 333)

Name: NF4662-Insertion-4
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4662-Insertion-4
NF4662-Insertion-4
[»] chr4 (7 HSPs)
chr4 (8-333)||(31245313-31245638)
chr4 (11-256)||(31019318-31019563)
chr4 (8-75)||(31029196-31029263)
chr4 (110-320)||(31158866-31159076)
chr4 (172-257)||(31029360-31029445)
chr4 (17-57)||(31158773-31158813)
chr4 (16-60)||(31527932-31527976)
[»] chr6 (7 HSPs)
chr6 (8-333)||(13609364-13609689)
chr6 (20-62)||(33389605-33389647)
chr6 (21-60)||(33411487-33411526)
chr6 (20-56)||(9168304-9168340)
chr6 (20-60)||(33059096-33059136)
chr6 (20-60)||(33273325-33273365)
chr6 (20-56)||(33287075-33287111)
[»] chr7 (1 HSPs)
chr7 (26-305)||(14724617-14724898)
[»] chr5 (1 HSPs)
chr5 (26-324)||(17598864-17599168)
[»] scaffold0428 (1 HSPs)
scaffold0428 (20-60)||(8293-8333)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 31245638 - 31245313
Alignment:
Q  8 tcagagacatctcgaccatacaaaaatgagcccaacactttaattgctagtggaacgccagtggcatatgttagtgcatcatatgtcaaatctatgtaac 107  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||||| |||||| | ||||||||    
T  31245638 tcagagacatctcggccatacaaaaatgagcccaaaactttaattgctaatggaaggccattggcatatgttagtgcatcatctgtcaagtatatgtaac 31245539  T
Q  108 cgctcatgatattatcacttttgaaagctttcctacaaaacaattgaagggcattattatgatccaagggtcgaactttgtaaacttcatctgctccatg 207  Q
    |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  31245538 cgctcatgatatcatcactcttgaaagccttcctacaaaacaattgaagggcattattatgatccaagagtcgaactttgtacacttcatctactccatg 31245439  T
Q  208 ctctcccaagatatggccatttcttgaaattaaaatgattctactccctgtgcctagacactctcgtgtcatggccaaattatccagttgttcaacttta 307  Q
    ||||| |||||||||  ||| ||| |||||||  ||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||| |    
T  31245438 ctctctcaagatatgaacatctctagaaattatgatgattctactccctgtgcctagccattctcgtgtcatagccaatttatccagttgttcaacttga 31245339  T
Q  308 tcaacgttatcaagaactacaaggga 333  Q
    ||||| ||||||||||||| ||||||    
T  31245338 tcaacattatcaagaactataaggga 31245313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 31019318 - 31019563
Alignment:
Q  11 gagacatctcgaccatacaaaaatgagcccaacactttaattgctagtggaacgccagtggcatatgttagtgcatcatatgtcaaatctat-gtaaccg 109  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||||||| | |||| ||||||| | ||| |  |||  || | | | |||  |||||     
T  31019318 gagatatctcgaccaaacaaaaatgagcccaatactttaattgctagtggtaggccattggcataagatagcgtgtcaagtg-ccagtttatcataacca 31019416  T
Q  110 ctcatgatattatcacttttgaaagctttcctacaaaacaattgaagggcattattatgatccaagggtcgaactttgtaaacttcatctgctccatgct 209  Q
    ||||| |||| ||||  ||||||||||||   |||||| |||||||| |  ||  | | || |||| || |||||||||||||||||||  |||||| ||    
T  31019417 ctcataatatgatcaagtttgaaagctttttgacaaaataattgaagagagttggtctcattcaagagtggaactttgtaaacttcatcaactccatact 31019516  T
Q  210 ctcccaagatatggccatttcttgaaattaaaatgattctactccct 256  Q
    |   |||||||||  ||| ||| ||||||| ||||||||||||||||    
T  31019517 cattcaagatatgctcatctctagaaattataatgattctactccct 31019563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 31029196 - 31029263
Alignment:
Q  8 tcagagacatctcgaccatacaaaaatgagcccaacactttaattgctagtggaacgccagtggcata 75  Q
    ||||||| |||||||||| |||||||||||||||| |||||||| |||||||| | |||| |||||||    
T  31029196 tcagagatatctcgaccaaacaaaaatgagcccaatactttaatagctagtggtaggccattggcata 31029263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 320
Target Start/End: Original strand, 31158866 - 31159076
Alignment:
Q  110 ctcatgatattatcacttttgaaagctttcctacaaaacaattgaagggcattattatgatccaagggtcgaactttgtaaacttcatctgctccatgct 209  Q
    ||||| |||| ||||  ||||||||||||   ||||||||||||||| |  ||| |   || |||| || |||||||||||||| ||||  |||||| ||    
T  31158866 ctcataatatgatcaagtttgaaagctttttgacaaaacaattgaagagagttagtcccattcaagagtggaactttgtaaactacatcaactccatact 31158965  T
Q  210 ctcccaagatatggccatttcttgaaattaaaatgattctactccctgtgcctagacactctcgtgtcatggccaaattatccagttgttcaactttatc 309  Q
    ||  |||||||||  ||| ||| ||||||| || ||||||||||||||  ||||  || || ||  |||  || || ||||| |||||||||||||||||    
T  31158966 ctttcaagatatgttcatctctagaaattataacgattctactccctgcacctaagcattcacgattcacagctaatttatcaagttgttcaactttatc 31159065  T
Q  310 aacgttatcaa 320  Q
    ||| |||||||    
T  31159066 aacattatcaa 31159076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 31029360 - 31029445
Alignment:
Q  172 caagggtcgaactttgtaaacttcatctgctccatgctctcccaagatatggccatttcttgaaattaaaatgattctactccctg 257  Q
    |||| || |||||||||||||||||||  |||||| |||   |||||||||  ||| ||| ||||||| |||||||||||||||||    
T  31029360 caagagtggaactttgtaaacttcatcaactccatactcattcaagatatgctcatctctagaaattataatgattctactccctg 31029445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 31158773 - 31158813
Alignment:
Q  17 tctcgaccatacaaaaatgagcccaacactttaattgctag 57  Q
    ||||||||| |||||||||| ||||| ||||||||||||||    
T  31158773 tctcgaccaaacaaaaatgatcccaatactttaattgctag 31158813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 31527932 - 31527976
Alignment:
Q  16 atctcgaccatacaaaaatgagcccaacactttaattgctagtgg 60  Q
    |||||||||| ||||||||||||||||  ||||||| ||||||||    
T  31527932 atctcgaccaaacaaaaatgagcccaatgctttaatcgctagtgg 31527976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 13609689 - 13609364
Alignment:
Q  8 tcagagacatctcgaccatacaaaaatgagcccaacactttaattgctagtggaacgccagtggcatatgttagtgcatcatatgtcaaatctatgtaac 107  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||   |||||| ||||| ||||||||||||| |||   ||||    
T  13609689 tcagagacatctcgaccatacaaaaatgagcccaacacttcaattgctagtggaatgccatcagcatattttagtacatcatatgtcaagtctgcataac 13609590  T
Q  108 cgctcatgatattatcacttttgaaagctttcctacaaaacaattgaagggcattattatgatccaagggtcgaactttgtaaacttcatctgctccatg 207  Q
    | |||| ||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |||| || | ||| ||||  |||| ||||||| |||||||    
T  13609589 cactcaagatatcatcacttttgaaagctttcctacaaaacaatcgaagggcatcattaagatctaatgctcgtacttcataaatttcatctactccatg 13609490  T
Q  208 ctctcccaagatatggccatttcttgaaattaaaatgattctactccctgtgcctagacactctcgtgtcatggccaaattatccagttgttcaacttta 307  Q
    ||||| |||||||||||||| ||| |||||||  || |||||||||||||  |||||||| |||||||| ||| |||  |||||||||||||||||||||    
T  13609489 ctctctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccagttgttcaacttta 13609390  T
Q  308 tcaacgttatcaagaactacaaggga 333  Q
    ||||| ||||||||||||||||||||    
T  13609389 tcaacattatcaagaactacaaggga 13609364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 33389605 - 33389647
Alignment:
Q  20 cgaccatacaaaaatgagcccaacactttaattgctagtggaa 62  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  33389605 cgaccaaacaaaaatgagcccaatactttaattgctagtggaa 33389647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 33411487 - 33411526
Alignment:
Q  21 gaccatacaaaaatgagcccaacactttaattgctagtgg 60  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  33411487 gaccaaacaaaaatgagcccaatactttaattgctagtgg 33411526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 9168304 - 9168340
Alignment:
Q  20 cgaccatacaaaaatgagcccaacactttaattgcta 56  Q
    |||||| |||||||||||||||| |||||||||||||    
T  9168304 cgaccaaacaaaaatgagcccaatactttaattgcta 9168340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 33059096 - 33059136
Alignment:
Q  20 cgaccatacaaaaatgagcccaacactttaattgctagtgg 60  Q
    |||||| ||||||| |||||||| |||||||||||||||||    
T  33059096 cgaccaaacaaaaacgagcccaatactttaattgctagtgg 33059136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 33273325 - 33273365
Alignment:
Q  20 cgaccatacaaaaatgagcccaacactttaattgctagtgg 60  Q
    |||||| |||||||||||||||| ||| |||||||||||||    
T  33273325 cgaccaaacaaaaatgagcccaatactataattgctagtgg 33273365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 33287075 - 33287111
Alignment:
Q  20 cgaccatacaaaaatgagcccaacactttaattgcta 56  Q
    |||||| |||||||||||||||| |||||||||||||    
T  33287075 cgaccaaacaaaaatgagcccaatactttaattgcta 33287111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 26 - 305
Target Start/End: Complemental strand, 14724898 - 14724617
Alignment:
Q  26 tacaaaaatgagcccaacactttaattgctagt--ggaacgccagtggcatatgttagtgcatcatatgtcaaatctatgtaaccgctcatgatattatc 123  Q
    ||||||||||| ||||||||||||||||||| |  | ||  ||  ||||||||   ||| |||||| |||| | | ||||||||||||||||| ||  ||    
T  14724898 tacaaaaatgatcccaacactttaattgctaatatgcaagacctttggcatattcgagtacatcatctgtcgagtttatgtaaccgctcatgacatcgtc 14724799  T
Q  124 acttttgaaagctttcctacaaaacaattgaagggcattattatgatccaagggtcgaactttgtaaacttcatctgctccatgctctcccaagatatgg 223  Q
    | |||| ||||||||||||||||||||||||||||||| ||||||||  | | ||||||||||||||||||||||| ||||||||||||  |||||||||    
T  14724798 aatttttaaagctttcctacaaaacaattgaagggcatcattatgatttatgagtcgaactttgtaaacttcatctactccatgctctctgaagatatgg 14724699  T
Q  224 ccatttcttgaaattaaaatgattctactccctgtgcctagacactctcgtgtcatggccaaattatccagttgttcaactt 305  Q
    | || ||| || ||||  ||||||||||| ||||||||||| || | || | |||||||||| || || |||||||||||||    
T  14724698 ctatctctagatattacgatgattctacttcctgtgcctagccattatcatttcatggccaatttttcaagttgttcaactt 14724617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 324
Target Start/End: Original strand, 17598864 - 17599168
Alignment:
Q  26 tacaaaaatgagcccaacactttaattgctagt--ggaacgccagtggcatatgttagtgcatcatatgtcaaatctatgtaaccgctcatgatattatc 123  Q
    ||||||||||| ||||||||||||||||||| |  | ||  ||  ||||||||   ||| |||||| |||| | | ||||||||||||||||| ||  ||    
T  17598864 tacaaaaatgatcccaacactttaattgctaatatgcaagacctttggcatattcgagtacatcatctgtcgagtttatgtaaccgctcatgacatcgtc 17598963  T
Q  124 acttttgaaagctttcctacaaaacaattgaagggcattattatgatccaagggtcgaactttgtaaacttcatctgctccatgctctcccaagatatgg 223  Q
    | |||| ||||||||||||||||||||||||||||||| ||||||||  | | ||||||||||||||||||||||| ||||||||||||  |||||||||    
T  17598964 aatttttaaagctttcctacaaaacaattgaagggcatcattatgatttatgagtcgaactttgtaaacttcatctactccatgctctctgaagatatgg 17599063  T
Q  224 ccatttcttgaaattaaaatgattctactccctgtgcct----agacactctcgtgtcatggccaaattatccagttgttcaactttatcaacgttatca 319  Q
    | || ||| || ||||  ||||||||||| | |||||||    || || |||| | |||||||||| || |||||||||||||||| || ||| ||||||    
T  17599064 ctatctctagatattacgatgattctacttcttgtgcctagccagccattctcatttcatggccaatttttccagttgttcaacttgatgaacattatca 17599163  T
Q  320 agaac 324  Q
    |||||    
T  17599164 agaac 17599168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 8293 - 8333
Alignment:
Q  20 cgaccatacaaaaatgagcccaacactttaattgctagtgg 60  Q
    |||||| |||||||||||||||| ||| |||||||||||||    
T  8293 cgaccagacaaaaatgagcccaatactgtaattgctagtgg 8333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University