View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4662-Insertion-7 (Length: 217)
Name: NF4662-Insertion-7
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662-Insertion-7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 42988704 - 42988589
Alignment:
| Q |
96 |
gagatagagtacgttagggaaattggaatgggaatgggaatgtaatgtagggtggtgaaacgcgtgaatggagtactcctaagagctggtgccaactttg |
195 |
Q |
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| T |
42988704 |
gagatagagtacgttagggaaattggaatgggaatg------taatgtagggtggtgaaacgcgtgaatggagtactcctaaaagctggcgccaactttg |
42988611 |
T |
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| Q |
196 |
caagctggaaccttttgtttgg |
217 |
Q |
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| T |
42988610 |
caagctggaaccttttgtttgg |
42988589 |
T |
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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 42990549 - 42990471
Alignment:
| Q |
8 |
gaaatgtgtgagtgagaaatgttgatgtaattgttgcaatgtgaaggatgtgttagaattagaaaagagggtctatata |
86 |
Q |
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| T |
42990549 |
gaaatgtgtgagtgagaaatgttggtgtaattgttgcaatgtgaaggatgtgttagaattagaaaagagggtctatata |
42990471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 38219229 - 38219387
Alignment:
| Q |
12 |
tgtgtgagtgagaaatgttgatgtaattgttgcaatgtg--aaggatgtgttagaattagaaaagagggtctatatatatgtgtgtgagatagagtacgt |
109 |
Q |
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| T |
38219229 |
tgtgtgagagagaaatattaatgtaattgttgtgatgtgtgaaggatgtgttagaataagaaaagagggtctatatata--tgtgtgagatagagtacgt |
38219326 |
T |
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| Q |
110 |
tagggaaattggaatggga-------atgggaatgtaatgtagggtggtgaaacgcgtgaa |
163 |
Q |
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| T |
38219327 |
tagggaaattggaatgagaatatgttatgggaatgtaatgtagggtggtgagacgcgtgaa |
38219387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 38215004 - 38215087
Alignment:
| Q |
12 |
tgtgtgagtgagaaatgttgatgtaattgttgcaatgtg--aaggatgtgttagaattagaaaagagggtctatatatatgtgt |
93 |
Q |
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| T |
38215004 |
tgtgtgagagagaaatattaatgtaattgttgtgatgtgtgaaggatgtgttagaattagaaaagagggtctatatatgtgtgt |
38215087 |
T |
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