View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4662_high_1 (Length: 634)
Name: NF4662_high_1
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 45 - 619
Target Start/End: Complemental strand, 11003607 - 11003034
Alignment:
| Q |
45 |
acattttcttttaaacatggtataaatggtaaacaattatccctctactccctgcctcatcgtctaatctacaatcacagacaga--agaagnnnnnnnc |
142 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
11003607 |
acattttcttttaaacatggtataaatggtcaacaattatccctctactccctgcctcatcgtctaatctacaatcacagacagagaagaagaaaaaaac |
11003508 |
T |
|
| Q |
143 |
tttgaggaagtcgtctggagaaaattacctaaaggtgcacaacgacgacgttggttattgtaatagaggatgtctgaataccaaccatgtttacaaagac |
242 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11003507 |
tttgaggaagtcgtttggagaaaattacctgaaggtgcac------gacgttggttattgtaatcgaggatgtctgaataccaaccatgtttacaaagac |
11003414 |
T |
|
| Q |
243 |
tattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttgccaccatgcttaaaatcccaagatgtaag |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11003413 |
tattgagccatgaaagttcaaatccataaaacatcatacgatgaatatccgtacaagaaatgttgttgtttccaccatgcttaaaatcccaagatgtaag |
11003314 |
T |
|
| Q |
343 |
aaacatcaactctatacgacactcatctcccagagccaattccaaaagagatttgtccccaaacacaatatagttccctttctgctgctcataagaatta |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11003313 |
aaacatcaactctatacgacactcatctcccagagccaattccaaaagagatttgtccccaaacacaatatagttccctttctgctgttcataagaatta |
11003214 |
T |
|
| Q |
443 |
ctaatgttcatacaagcagcatcaaagtaaatacctgaagaatattggacatgtttaggacatgtcacatataacatagagttgaacaa---tatattgc |
539 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| | |
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| T |
11003213 |
ctaatgttcatacaagcagcatcaaagtaaatacctgaagaatattggacatgtttgggacatgtcacatataacatagacttgaacaaatctatatagt |
11003114 |
T |
|
| Q |
540 |
aatcatcaaacactgtatatggcaagactcttggattgatggtcgttgaagtgaaattatacaagcctagtggatgaggt |
619 |
Q |
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||| |||||||| ||||||||||| || |||||||||||||| ||||| |||| |||| |||||||||||||||||| |
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| T |
11003113 |
gatccccaaacactctatatggcaaggctattggattgatggtccttgaatcgaaactatagaagcctagtggatgaggt |
11003034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 144 - 621
Target Start/End: Complemental strand, 11000532 - 11000055
Alignment:
| Q |
144 |
ttgaggaagtcgtctggagaaaattacctaaaggtgcacaacgacgacgttggttattgtaatagaggatgtctgaataccaaccatgtttacaaagact |
243 |
Q |
| |
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||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| || |
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| T |
11000532 |
ttgaggaagtcgtttggagaaaattacctaaacgtgcacaaccacgacgttggttattgtaatcgaggatttctgaataccaaccatgtttacaaaggct |
11000433 |
T |
|
| Q |
244 |
attgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttgccaccatgcttaaaatcccaagatgtaaga |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| | |||| ||||||||||||| |
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| T |
11000432 |
attgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtgcaaaaaatgttgttg---ccaccatgttcaaaaggccaagatgtaaga |
11000336 |
T |
|
| Q |
344 |
aacatcaactctatacgacactcatctcccagagccaattccaaaagagatttgtccccaaacacaatatagttccctttctgctgctcataagaattac |
443 |
Q |
| |
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|||||||||||||||||||| ||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11000335 |
aacatcaactctatacgacatccatctcctagaccaaattccaaaagagatctgtccccaaacacaatatagttccctttctgctgctcataagaattac |
11000236 |
T |
|
| Q |
444 |
taatgttcatacaagcagcatcaaagtaaatacctgaagaatattggacatgtttaggacatgtcacatataacatagagttgaacaa---tatattgca |
540 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
11000235 |
taatgttcatacaagcagcatcaaagtaaatacctgaagaatattggacatgtttaggacatgtcacatataacatagagttgaacaaatctatattgta |
11000136 |
T |
|
| Q |
541 |
atcatcaaacactgtatatggcaagactcttggattgatggtcgttgaagtgaaattatacaagcctagtggatgaggttg |
621 |
Q |
| |
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| T |
11000135 |
atcatcaaacactgtatatggcaagactcttggattgatggtcgttgaagtgaaattatacaagcctagtggatgaggttg |
11000055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 11009082 - 11009172
Alignment:
| Q |
220 |
ataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttg |
310 |
Q |
| |
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||||| |||||||||||| |||| |||||||| |||||||||||||||||| ||||| |||||||||| || |||||||||||||||||| |
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| T |
11009082 |
ataccgaccatgtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttg |
11009172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 232 - 313
Target Start/End: Original strand, 11034495 - 11034576
Alignment:
| Q |
232 |
tttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttg |
313 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |
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| T |
11034495 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgttgttgttg |
11034576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 214 - 312
Target Start/End: Original strand, 10921610 - 10921708
Alignment:
| Q |
214 |
gtctgaataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgtt |
312 |
Q |
| |
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||||| |||||| |||| |||||||| ||| |||||||| |||||||||||||||||||| ||| |||||| || || || || |||||||||||||| |
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| T |
10921610 |
gtctgcataccatccatctttacaaaaactgttgagccaagaaagttcaaatccataaaagatctcacgacggatgtctgtgcatgaaatgttgttgtt |
10921708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 10975113 - 10975204
Alignment:
| Q |
215 |
tctgaataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgtt |
306 |
Q |
| |
|
|||| ||||| |||||| || |||| |||||||||||| |||| ||||||||||||| ||||||||||||| | ||| | ||||||||||| |
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| T |
10975113 |
tctgcataccgaccatgattgcaaatactattgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgtt |
10975204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 10905207 - 10905293
Alignment:
| Q |
220 |
ataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgtt |
306 |
Q |
| |
|
|||||||||||| || ||| |||||||||||| |||| ||||||||||||| ||||||||||||| | ||| | ||||||||||| |
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| T |
10905207 |
ataccaaccatgattgtaaatactattgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgtt |
10905293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 10987980 - 10988070
Alignment:
| Q |
223 |
ccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttg |
313 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| || | ||||||||||||| |||||||||| || ||||| ||||||||||| |||||| |
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| T |
10987980 |
ccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttg |
10988070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 11019148 - 11019238
Alignment:
| Q |
223 |
ccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttg |
313 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| || | ||||||||||||| |||||||||| || ||||| ||||||||||| |||||| |
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| T |
11019148 |
ccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttg |
11019238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 10921855 - 10921935
Alignment:
| Q |
441 |
tactaatgttcatacaagc---agcatcaaagtaaatacctgaagaatattggacatgtttaggacatgtcacatataaca |
518 |
Q |
| |
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|||||||||||||||| || || | ||||||||||||| ||||||||||||||||| || |||||| ||| |||||||| |
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| T |
10921855 |
tactaatgttcatacaggccggagaagcaaagtaaataccagaagaatattggacatgattcggacatctcatatataaca |
10921935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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