View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4662_high_12 (Length: 319)
Name: NF4662_high_12
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 50654734 - 50655037
Alignment:
| Q |
1 |
caacaatttatgcaaccaaataaaatccaaaacctatagttcaacaaaaaccattaacccgaactaaggatctgttagtccacataaaattggaatctgt |
100 |
Q |
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| T |
50654734 |
caacaatttatgcaaccaaataaaatccaaaacctatagttcaacaaaaaccaataacccgaactaaggatctgttagtccacataaaattggaatctgt |
50654833 |
T |
|
| Q |
101 |
aattaagaagattgtatcatttgagagcaaaccaatcagttcaagtgaggaaacttatactatgctaaaaagactaatgaatgttacttatgaattgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50654834 |
aattaagaagattgtatcatttgagagcaaaccaattagttcaagtgaggaaaattatactatgctaaaaagactaatgaatgttacttatgaattgcaa |
50654933 |
T |
|
| Q |
201 |
aatgattcagtcactatgatattgattttccctcaacnnnnnnnnnnnnnnnnctaagatattgatttctatctttctcagtc--atgaatattgggata |
298 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
50654934 |
aatgattcagtcactatgatattgattttccctcaa-------aaaaaaaaaactaagatattgatttctatctttctcaatcatatgaatattgggata |
50655026 |
T |
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| Q |
299 |
tgattgatgat |
309 |
Q |
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||||||||||| |
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| T |
50655027 |
tgattgatgat |
50655037 |
T |
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