View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4662_high_15 (Length: 288)
Name: NF4662_high_15
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662_high_15 |
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| [»] scaffold0522 (1 HSPs) |
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| [»] scaffold0309 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 39030482 - 39030213
Alignment:
| Q |
1 |
taaaaataaaaagtagcattatttagatgtaagacttgtaaaaatatcgtctcttcttttttgcataattatgaccccattgtatatattgttcgatgtt |
100 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| ||| ||||| |
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| T |
39030482 |
taaaaataaaaagtagtgttatttatatgtaagacttgtaaaaatatcgtctctttttttttccataattatgacgccattgtatatattattcaatgtt |
39030383 |
T |
|
| Q |
101 |
ttcctcgtatttaaaaaagaatgttgcattaacttattaattgttttttaaatgtactaatgtaaagttattaatatgatccactgagtaatttttaaag |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39030382 |
ttcctcgtatttaaaag-gaatgttgcattaacttattaattgttttttaaatgtaccaatgtaaagttattaatatgatccactgagtaatatttaaag |
39030284 |
T |
|
| Q |
201 |
agttgttagattgaagtaaattgatacttattaaacattgcctttaaaaattgaatgaataagggatgtgt |
271 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
39030283 |
agttgttagattggagtaaattgatacttattaagcattgcctttaaaaattgaatgaataagagatgtgt |
39030213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 28570696 - 28570572
Alignment:
| Q |
135 |
tattaattgttttttaaatgtactaatgtaaagttattaatatgatccactgagtaatttttaaagagttgttagattgaagtaaattgatacttattaa |
234 |
Q |
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|||||||||||||| ||| ||||||||||||||||||| || || ||||| | |||||||| |||||||||||||||| | ||||| ||||||||||| |
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| T |
28570696 |
tattaattgtttttaaaaagtactaatgtaaagttatttgtaggacccacttaataatttttgaagagttgttagattggaataaataaatacttattaa |
28570597 |
T |
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| Q |
235 |
acattgcctttaaaaattgaatgaa |
259 |
Q |
| |
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||||| |||||||||||||| |||| |
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| T |
28570596 |
acattacctttaaaaattgattgaa |
28570572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 28578289 - 28578165
Alignment:
| Q |
135 |
tattaattgttttttaaatgtactaatgtaaagttattaatatgatccactgagtaatttttaaagagttgttagattgaagtaaattgatacttattaa |
234 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||||||| || || ||||| | |||||||| |||||||||||||||| | ||||| ||||||||||| |
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| T |
28578289 |
tattaattgtttttaaaaagtactaatgtaaagttatttgtaggacccacttaataatttttgaagagttgttagattggaataaataaatacttattaa |
28578190 |
T |
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| Q |
235 |
acattgcctttaaaaattgaatgaa |
259 |
Q |
| |
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||||| |||||||||||||| |||| |
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| T |
28578189 |
acattacctttaaaaattgattgaa |
28578165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 270
Target Start/End: Original strand, 35094403 - 35094618
Alignment:
| Q |
55 |
tcttttttgcataattatgaccccattgtatatattgttcgatgttttcctcgtatttaaaaaagaatgttgcattaacttattaattgttttttaaatg |
154 |
Q |
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||||| ||||||||||||| || ||||| ||| | ||| ||| ||||||| ||||||||||| || |||||| ||| |||||||||||||| |||| |
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| T |
35094403 |
tctttcttgcataattatggcctcattgcatactctattcaatgctttcctcatatttaaaaaaaaaagttgcacaaacatattaattgtttttgaaata |
35094502 |
T |
|
| Q |
155 |
tactaatgtaaagttattaatatgatccactgagtaatttttaaagagttgttagattgaagtaaattgatacttattaaacattgcctttaaaaattga |
254 |
Q |
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|||||||||||||||||| || || ||||| |||| ||| | |||||||| | |||| || ||| || ||||||| |||| ||||| |||| ||| |
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| T |
35094503 |
aactaatgtaaagttattagtaggacccacttagtattttcttaagagttgctgaattggagcgaatgaatgcttattaggcattacctttgaaaactga |
35094602 |
T |
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| Q |
255 |
atgaataagggatgtg |
270 |
Q |
| |
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|||||||| |||||| |
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| T |
35094603 |
ttgaataagtgatgtg |
35094618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 2377 - 2200
Alignment:
| Q |
20 |
tatttagatgtaagacttgtaaaaatatcgtctct-tcttttttgcataattatgaccccattgtatatattgttcgatgttttcctcgtatttaaaaaa |
118 |
Q |
| |
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|||||||| ||||| |||||| ||| || ||||| ||| | ||||||||||||||| |||||| ||| | | ||| |||| |||||||||||||| |
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| T |
2377 |
tatttagaagtaaggcttgtacaaacattgtctcactctctcttgcataattatgactccattgcatactctatcatatgctttcatcgtatttaaaaaa |
2278 |
T |
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| Q |
119 |
gaatgttgcattaacttattaattgttttttaaatgtactaatgtaaagttattaatatgatccactgagtaattttt |
196 |
Q |
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| ||||||| ||| |||| ||||||||| |||| ||||||||| ||| ||||| || || ||||| |||||||||| |
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| T |
2277 |
aattgttgcacaaacatatttattgtttttgaaatatactaatgtcaagctattagtaggacccacttagtaattttt |
2200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 263
Target Start/End: Original strand, 2480 - 2621
Alignment:
| Q |
122 |
tgttgcattaacttattaattgttttttaaatgtactaatgtaaagttattaatatgatccactgagtaatttttaaagagttgttagattgaagtaaat |
221 |
Q |
| |
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||||||| ||| |||| ||||||||| |||| ||||||||| ||| ||||| || || ||||| |||||||||| |||||||||| ||||| || ||| |
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| T |
2480 |
tgttgcacaaacatatttattgtttttgaaatatactaatgtcaagctattagtaggacccacttagtaattttttaagagttgttggattgccgtgaat |
2579 |
T |
|
| Q |
222 |
tgatacttattaaacattgcctttaaaaattgaatgaataag |
263 |
Q |
| |
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||| ||||||| || | |||||||||||| |||||||| |
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| T |
2580 |
agatgcttattaggttttacgtttaaaaattgattgaataag |
2621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 7826789 - 7826751
Alignment:
| Q |
135 |
tattaattgttttttaaatgtactaatgtaaagttatta |
173 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||| |
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| T |
7826789 |
tattaatagtttttgaaatgtactaatgtaaagttatta |
7826751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 7769125 - 7769194
Alignment:
| Q |
144 |
ttttttaaatgtactaatgtaaagttattaatatgatccactgagtaatttttaaagagttgttagattg |
213 |
Q |
| |
|
||||| ||||||||||||||||| |||||| | || ||||| | |||||||| | |||||||||||||| |
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|
| T |
7769125 |
tttttaaaatgtactaatgtaaaattattagtgagacccacttaataattttttaggagttgttagattg |
7769194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 43567045 - 43566993
Alignment:
| Q |
121 |
atgttgcattaacttattaattgttttttaaatgtactaatgtaaagttatta |
173 |
Q |
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|||||||| ||| ||||| |||||||| |||||||||||||||||| ||||| |
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|
| T |
43567045 |
atgttgcacaaacatattatttgtttttgaaatgtactaatgtaaagctatta |
43566993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 8050707 - 8050625
Alignment:
| Q |
100 |
tttcctcgtatttaaaaaagaatgttgcattaacttattaattgttttttaaatgtactaatgtaaagttattaatatgatcc |
182 |
Q |
| |
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||||||| || |||||| | |||||||| ||| ||||| |||||||| |||||||| |||||||||||||| |||||||| |
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| T |
8050707 |
tttcctcctacttaaaagaaaatgttgcgcaaacatattagttgtttttgaaatgtaccgatgtaaagttattagtatgatcc |
8050625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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