View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4662_high_16 (Length: 284)
Name: NF4662_high_16
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 52343005 - 52342752
Alignment:
| Q |
1 |
ttgtaatttcgattcagatgatgactcaacaccaaaattaaacacccccaaataacaaaa-ttagggtttgatttcaatttcaatttcaatttcaatttg |
99 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52343005 |
ttgtaatttcgattcagatgatgactcaacacc-----------ccccaaaataacaaaaattagggtttgatttcaatttcaatttcaatttcaatttg |
52342917 |
T |
|
| Q |
100 |
aaagcagtacactaccaaccatgaacaactctgttgcatctatctttaatccacttaaaactcttcctaagagagcctttgagtttaccttcaacagaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52342916 |
aaagcagtacactaccaaccatgaacaactctgttgcatctatctttaatccacttaaaactcttcctaagagagcctttgagtttaccttcaacagaat |
52342817 |
T |
|
| Q |
200 |
aaaccttgtaactagcaactcnnnnnnncctctgcaattcaggatcactaaagctccaacttttt |
264 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52342816 |
aaaccttgtaactagcaactctttttttcctctgcaattcaggatcactaaagctccaacttttt |
52342752 |
T |
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