View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4662_high_19 (Length: 257)

Name: NF4662_high_19
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4662_high_19
NF4662_high_19
[»] chr4 (3 HSPs)
chr4 (18-225)||(666917-667124)
chr4 (18-220)||(13003079-13003275)
chr4 (18-69)||(666822-666873)
[»] chr6 (4 HSPs)
chr6 (18-223)||(1051986-1052191)
chr6 (18-120)||(13735455-13735557)
chr6 (18-224)||(10080849-10081035)
chr6 (19-82)||(13735357-13735420)
[»] chr2 (4 HSPs)
chr2 (18-225)||(43670537-43670744)
chr2 (18-219)||(3363034-3363235)
chr2 (28-217)||(41456362-41456551)
chr2 (107-139)||(13163642-13163674)
[»] chr8 (6 HSPs)
chr8 (18-224)||(38658000-38658206)
chr8 (18-219)||(5063252-5063453)
chr8 (19-141)||(2267624-2267746)
chr8 (142-224)||(44245282-44245364)
chr8 (163-225)||(2267748-2267809)
chr8 (28-176)||(7933204-7933351)
[»] chr7 (9 HSPs)
chr7 (18-219)||(48456139-48456340)
chr7 (21-211)||(41454176-41454366)
chr7 (18-217)||(28602830-28603029)
chr7 (22-217)||(10830398-10830593)
chr7 (22-217)||(11024190-11024385)
chr7 (18-82)||(41454074-41454138)
chr7 (18-141)||(25500431-25500554)
chr7 (29-141)||(21900466-21900577)
chr7 (163-225)||(25500368-25500429)
[»] chr5 (6 HSPs)
chr5 (19-219)||(4693465-4693665)
chr5 (72-225)||(20900088-20900240)
chr5 (28-176)||(9844146-9844293)
chr5 (28-217)||(2153376-2153564)
chr5 (107-149)||(9334513-9334555)
chr5 (106-155)||(19852884-19852933)
[»] chr1 (8 HSPs)
chr1 (18-224)||(47294785-47294993)
chr1 (23-224)||(38671473-38671673)
chr1 (22-216)||(39806814-39807008)
chr1 (72-223)||(21818246-21818396)
chr1 (22-217)||(28412944-28413139)
chr1 (22-217)||(2824092-2824287)
chr1 (107-149)||(9316775-9316817)
chr1 (107-139)||(45619499-45619531)
[»] chr3 (2 HSPs)
chr3 (21-224)||(4507207-4507411)
chr3 (28-176)||(4591592-4591739)
[»] scaffold0265 (1 HSPs)
scaffold0265 (72-223)||(14413-14563)
[»] scaffold0012 (1 HSPs)
scaffold0012 (18-55)||(202947-202984)
[»] scaffold1487 (1 HSPs)
scaffold1487 (107-157)||(1430-1480)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 666917 - 667124
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  666917 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcaaaaaaaggaggtttcatcttatcaaagtgacgtggcag 667016  T
Q  118 aaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctca 217  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  667017 aaacccactcgcaaagaaagctcaagtcgccatggcgagccaaacttcgccaggcgacatgttactttttcagcatatgtataaaaactcatttccttca 667116  T
Q  218 tttcagag 225  Q
    ||||||||    
T  667117 tttcagag 667124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 13003079 - 13003275
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttc-gccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggca 116  Q
    |||||||||||||||||| ||||||| || |||||||||||||| | | ||| | ||||||||||| |||| |||||||||| ||    |||| ||||||    
T  13003079 cagagagttggaaaaacatgacaagagcaattcgccatggcgagaa-atattcctgccaggcgaaataaggcggtttcatctgattcttgtgatgtggca 13003177  T
Q  117 gaaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctc 216  Q
    |||||||||| |||||||||||||||||||      |||| |||| | |||||||||||||  |  |||||||||| |||||||||| ||||||||||||    
T  13003178 gaaacccactagcaaagaaagctcaagtcg------cgagacaaaatccgccaggcgaaattatgttttttcagcacatgtataaaagctcatttccctc 13003271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 666822 - 666873
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatt 69  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  666822 cagagagttggaaaaacaggacaagaacgcttcgccatggcgagcagaaatt 666873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 1052191 - 1051986
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcag 117  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||  |||||||||| |||| |||||||||||||||||| |||||||||||    
T  1052191 cagagagttggaaaaacatgacaagagcacttcgccatggcgagcagaaattctgccaggcgaagaaagcaggtttcatcttatcaaaatgacgtggcag 1052092  T
Q  118 aaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctca 217  Q
    ||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||    
T  1052091 aaacccactggcaaagaaagcttaagtcgccatggcgagccaaacttcgccaggcgaaatgtcactttttcaacatatgtataaaagctcatttccctca 1051992  T
Q  218 tttcag 223  Q
    ||||||    
T  1051991 tttcag 1051986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 13735455 - 13735557
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  13735455 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggcggtttcatctgatcaaagtgacgtggcag 13735554  T
Q  118 aaa 120  Q
    |||    
T  13735555 aaa 13735557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 10080849 - 10081035
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcag 117  Q
    |||| |||||||||| |||||| ||| ||||||||||||||||| | || |   |||||| |||| |||| |||||||||| |||   ||||||||||||    
T  10080849 cagaaagttggaaaatcaggacgagagcacttcgccatggcgagaaaaagtcctgccaggtgaaataaggcggtttcatctgatccttgtgacgtggcag 10080948  T
Q  118 aaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctca 217  Q
    ||||||||| ||||||||||||||||                    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10080949 aaacccactggcaaagaaagctcaag--------------------tcgccaggcgaaatgttactttttcagcatatgtataaaagctcatttccctca 10081028  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 13735357 - 13735420
Alignment:
Q  19 agagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaa 82  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  13735357 agagagttggaaaaacaagacaagaacacttcgccatggcgagcagaaattccgccaggcgaaa 13735420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 43670744 - 43670537
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcag 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||  |||||||| ||||||||||||||||||||| |||||||    
T  43670744 cagagagttggaaaaacaggacaagagcacttcgccatggcgagccgaaattctgccagggaaaaaaaggcggtttcatcttatcaaagtgatgtggcag 43670645  T
Q  118 aaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctca 217  Q
    ||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||     
T  43670644 aaacccactggcaaagaaagcttaagtcgccatggcgagccaaacttcgccaggcgaaatgtcactttttcagcatatgtataaaagctcatttccctcg 43670545  T
Q  218 tttcagag 225  Q
    ||||||||    
T  43670544 tttcagag 43670537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 3363235 - 3363034
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcag 117  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||  |||||| ||||||||| ||||| |||| ||||||||||||||||||    
T  3363235 cagagagttggaaaaacaggacaagagtacttcgccatggcgagcagaaattctgccaggtgaaaaaaggtggttttatctgatcaaagtgacgtggcag 3363136  T
Q  118 aaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctca 217  Q
    ||||||| | | |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  3363135 aaacccaatgggaaagaaagctcaagtcgccatggcgagccaaacttcgccaggcgaaatgttactttttcagcatatgtatacaagctcatttccctca 3363036  T
Q  218 tt 219  Q
    ||    
T  3363035 tt 3363034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 41456551 - 41456362
Alignment:
Q  28 gaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaacccactc 127  Q
    |||||||||| |||||||| |||||||||||||| |  | | | ||| ||||||| |||| ||||||||||||||   ||||| |||||||||||||||     
T  41456551 gaaaaacagggcaagaacaattcgccatggcgagaaatattcttgcctggcgaaataaggcggtttcatcttatcctggtgacatggcagaaacccactg 41456452  T
Q  128 gcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctca 217  Q
    ||||||||||||||  |||| |||  |||||| | | |||| ||| ||||  || |||||||||| | |||||||| || ||||| ||||    
T  41456451 gcaaagaaagctcagttcgccatggtgagccagattccgcctggcaaaattatattttttcagcacaagtataaaagcttatttctctca 41456362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 13163674 - 13163642
Alignment:
Q  107 tgacgtggcagaaacccactcgcaaagaaagct 139  Q
    |||||||||||||||||||| ||||||||||||    
T  13163674 tgacgtggcagaaacccactagcaaagaaagct 13163642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 38658206 - 38658000
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcag 117  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||| |||||||| ||||| |||| |||||||| |||||||||    
T  38658206 cagagagttggaaaaacaggacaagagtacttcgccatggcgagcagaaattctgccaggcaaaaaaaggcggttttatctgatcaaagttacgtggcag 38658107  T
Q  118 aaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctca 217  Q
    ||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  38658106 aaacccattggcaaagaaagctcaagtcgccatggcgagccaaacttcgccaggcgaaatgtcactttttcagcatatgtataaaagctcatttccctca 38658007  T
Q  218 tttcaga 224  Q
    |||||||    
T  38658006 tttcaga 38658000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 5063252 - 5063453
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcag 117  Q
    |||||||||||||||||||||||||| || || ||||||| |||||||||||  |||||||||||||||| |||||||||| ||||||||||||||||||    
T  5063252 cagagagttggaaaaacaggacaagagcagtttgccatggtgagcagaaattctgccaggcgaaaaaaggcggtttcatctgatcaaagtgacgtggcag 5063351  T
Q  118 aaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctca 217  Q
    ||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||    
T  5063352 aaacccactggcaaagaaagctcaagtcgccatggcgagccaaacttcgccaggcgaaatgttactttttcagcatatgtgtaaaagctcatttcccaca 5063451  T
Q  218 tt 219  Q
    ||    
T  5063452 tt 5063453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 2267624 - 2267746
Alignment:
Q  19 agagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| |||| ||||||||||||||    
T  2267624 agagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaattccgccgggcgaaaaaaggcggtttcatctgatcagagtgacgtggcaga 2267723  T
Q  119 aacccactcgcaaagaaagctca 141  Q
    |||||||| ||||||| ||||||    
T  2267724 aacccactggcaaagacagctca 2267746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 44245282 - 44245364
Alignment:
Q  142 agtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctcatttcaga 224  Q
    |||||| ||| | |||||||||| | | |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  44245282 agtcgccatggcaagccaaactttgtcgggcgaaatgtcactttttcagcatatgtataaaagctcatttccctcatttcaga 44245364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 2267748 - 2267809
Alignment:
Q  163 ttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctcatttcagag 225  Q
    |||||||||||||| || |||||| |||||||||||||||| |||||||||||||||||||||    
T  2267748 ttcgccaggcgaaaagtcactttt-cagcatatgtataaaagctcatttccctcatttcagag 2267809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 7933204 - 7933351
Alignment:
Q  28 gaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaacccactc 127  Q
    |||||||||| ||||| || |||||||||||||| |  | | ||||| |||| || |||  |||||||||| |||   |||||||||||||||||||||     
T  7933204 gaaaaacagggcaagagcaattcgccatggcgagaaatattctcgcctggcggaataagccggtttcatctgatctg-gtgacgtggcagaaacccactg 7933302  T
Q  128 gcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaa 176  Q
    ||||||||||||||  |||| ||| |||||||   |||||| |||||||    
T  7933303 gcaaagaaagctcagttcgccatggcgagccaggtttcgcctggcgaaa 7933351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 48456340 - 48456139
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaa-ggaggtttcatcttatcaaagtgacgtggca 116  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||  |||||||||||||| || ||||||||||||||||||||||||||||    
T  48456340 cagagagttggaaaaacaggacaagagcacttcgtcatggcgagcagaaattctgccaggcgaaaaaaaggcggtttcatcttatcaaagtgacgtggca 48456241  T
Q  117 gaaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctc 216  Q
    || ||||||| ||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  48456240 gagacccactggcaaagaaagctcaaatcgccatggcgagccaaacttcgccaggcgaaatgttactttttcagcatatgtat-aaagctcatttccctc 48456142  T
Q  217 att 219  Q
    |||    
T  48456141 att 48456139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 41454176 - 41454366
Alignment:
Q  21 agagttggaaaa-acaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaa 119  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| | |||||||| || | |||||||||||||||    
T  41454176 agagttggaaaaaacaggacaagaacacatcgccatggcgagcagaaattccgccaggcgaaaaaaggcgatttcatctgattagagtgacgtggcagaa 41454275  T
Q  120 acccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcattt 211  Q
    ||||||| ||||||| | ||||  |||| | | ||||||||| |||||||||||||| || || |||||||||||||||||||| |||||||    
T  41454276 acccactggcaaagacatctcatttcgccacggcgagccaaatttcgccaggcgaaaagtcac-ttttcagcatatgtataaaagctcattt 41454366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 28602830 - 28603029
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttc-gccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggca 116  Q
    |||||||||||||||||||||||||| || |||| ||||||||| | | ||| | ||||||| ||| |||| |||||||||| |||   |||||||||||    
T  28602830 cagagagttggaaaaacaggacaagagcaattcgacatggcgagaa-atattcctgccaggcaaaataaggcggtttcatctgatccttgtgacgtggca 28602928  T
Q  117 gaaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctc 216  Q
    |||| ||||| |||||||||||||||||||| ||   ||| |||| | |||||||| ||||  || ||||||||||||||||||||| ||||||||||||    
T  28602929 gaaatccactggcaaagaaagctcaagtcgccatagtgagacaaaatccgccaggctaaattatattttttcagcatatgtataaaagctcatttccctc 28603028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 10830398 - 10830593
Alignment:
Q  22 gagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaac 121  Q
    |||||||||||||||||||||| || |||||||||| ||| |  | | ||||| ||| ||| |||| |||||||||| |||   ||||||||||||||||    
T  10830398 gagttggaaaaacaggacaagagcaattcgccatggtgagaaatattctcgcctggccaaataaggcggtttcatctgatcctggtgacgtggcagaaac 10830497  T
Q  122 ccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctca 217  Q
    ||||| |||||||||||||||||||| ||| ||||| | | | |||||||||||||  || ||| |||||| | |||||||| |||||||| ||||    
T  10830498 ccactggcaaagaaagctcaagtcgccatggcgagctagaatccgccaggcgaaattatattttctcagcacaagtataaaagctcatttctctca 10830593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 11024190 - 11024385
Alignment:
Q  22 gagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaac 121  Q
    |||||||||||||||||||||| || |||||||||| ||| |  | | ||||| ||| ||| |||| |||||||||| |||   ||||||||||||||||    
T  11024190 gagttggaaaaacaggacaagagcaattcgccatggtgagaaatattctcgcctggccaaataaggcggtttcatctgatcctggtgacgtggcagaaac 11024289  T
Q  122 ccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctca 217  Q
    ||||| |||||||||||||||||||| ||| ||||| | | | |||||||||||||  || ||| |||||| | |||||||| |||||||| ||||    
T  11024290 ccactggcaaagaaagctcaagtcgccatggcgagctagaatccgccaggcgaaattatattttctcagcacaagtataaaagctcatttctctca 11024385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 41454074 - 41454138
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaa 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41454074 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaattccgccaggcgaaa 41454138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 25500554 - 25500431
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcag 117  Q
    |||||||||||||||||| ||||||||||||| |||||||| |||||||||| || ||||| |||||||  |||||||||| || | |||||||||  ||    
T  25500554 cagagagttggaaaaacatgacaagaacactttgccatggcaagcagaaattccggcaggcaaaaaaagacggtttcatctgattagagtgacgtgatag 25500455  T
Q  118 aaacccactcgcaaagaaagctca 141  Q
    ||||| ||| ||||||| ||||||    
T  25500454 aaaccgactggcaaagacagctca 25500431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 21900466 - 21900577
Alignment:
Q  29 aaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaacccactcg 128  Q
    ||||||||| ||||| || ||||| ||||| || |  | | ||||| ||||||| |||| |||||||||| ||| | ||||||||||||||||||||| |    
T  21900466 aaaaacagggcaagagcaattcgcgatggcaagaaatattatcgcctggcgaaataaggcggtttcatctaatcta-gtgacgtggcagaaacccactgg 21900564  T
Q  129 caaagaaagctca 141  Q
    |||||||||||||    
T  21900565 caaagaaagctca 21900577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 25500429 - 25500368
Alignment:
Q  163 ttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctcatttcagag 225  Q
    |||||||||||||| || |||||| |||||||||||||||| ||||||| |||||||||||||    
T  25500429 ttcgccaggcgaaaagtcactttt-cagcatatgtataaaagctcattttcctcatttcagag 25500368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 4693465 - 4693665
Alignment:
Q  19 agagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcaga 118  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||  | |||||||||||||| |||||||| | ||||||||||||||| |||    
T  4693465 agagagttggaaaaacaggacaagagcacttcgccatggcgagcagaaattctgtcaggcgaaaaaaggtggtttcatttgatcaaagtgacgtggtaga 4693564  T
Q  119 aacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctcat 218  Q
    |||||||| ||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  4693565 aacccactggcaaagaaagctcaaatcgtcatggcgagccaaacttcgccaggcgaaatgttacttttttagcatatgtataaaagctcatttccctcat 4693664  T
Q  219 t 219  Q
    |    
T  4693665 t 4693665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 20900240 - 20900088
Alignment:
Q  72 gccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccagg 171  Q
    |||||||||||||||  |||||||||| |||| |||||||||||||||||||||| ||||||| ||||||  |||| ||| ||||||||| ||| | |||    
T  20900240 gccaggcgaaaaaagacggtttcatctgatcagagtgacgtggcagaaacccactggcaaagacagctcatttcgccatggcgagccaaatttcactagg 20900141  T
Q  172 cgaaatgttactttttcagcatatgtataaaaactcatttccctcatttcagag 225  Q
    ||| | || || |||||||||| ||||||||| |||||||||||||||||||||    
T  20900140 cgagaagtcac-ttttcagcatgtgtataaaagctcatttccctcatttcagag 20900088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 9844293 - 9844146
Alignment:
Q  28 gaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaacccactc 127  Q
    |||||||||| ||||| || |||||||||||||| |  | | ||||| ||||||| |||| |||||||||| |||   |||||||||||||||||||||     
T  9844293 gaaaaacagggcaagagcaattcgccatggcgagaaatattctcgcctggcgaaataaggcggtttcatctgatccg-gtgacgtggcagaaacccactg 9844195  T
Q  128 gcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaa 176  Q
    ||||||||||||||  |||| ||| |||||||   |||||| |||||||    
T  9844194 gcaaagaaagctcagttcgccatggcgagccaggtttcgcctggcgaaa 9844146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 2153376 - 2153564
Alignment:
Q  28 gaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaacccactc 127  Q
    |||||||||| |||||| | || ||||||||||| |  | | ||||| ||||||| |||| |||||||||| |||   ||||| |||||||||||||||     
T  2153376 gaaaaacagggcaagaagaatttgccatggcgagaaatattctcgcctggcgaaataaggcggtttcatctgatctg-gtgacatggcagaaacccactg 2153474  T
Q  128 gcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctca 217  Q
    ||||| |||||| |  |||| ||| ||||||| | | |||| |||||||   || ||| |||||| | |||||||| |||||||| ||||    
T  2153475 gcaaaaaaagcttagttcgccatggcgagccagagtccgcctggcgaaagtatattttctcagcacaagtataaaagctcatttctctca 2153564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 9334513 - 9334555
Alignment:
Q  107 tgacgtggcagaaacccactcgcaaagaaagctcaagtcgcga 149  Q
    |||||||||||||||||||| | ||||||||||||| ||||||    
T  9334513 tgacgtggcagaaacccactgggaaagaaagctcaactcgcga 9334555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 19852884 - 19852933
Alignment:
Q  106 gtgacgtggcagaaacccactcgcaaagaaagctcaagtcgcgatgacga 155  Q
    |||| |||||||||||||||| |||||||||| ||| ||||| |||||||    
T  19852884 gtgatgtggcagaaacccactggcaaagaaaggtcatgtcgccatgacga 19852933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 47294993 - 47294785
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaa--ggaggtttcatcttatcaaagtgacgtggc 115  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||  | ||||||||||||  || | ||| |||| |||||||||| ||||     
T  47294993 cagagagttggaaaaacaggacaagagtacttcgccatggcgagcagaaattctgtcaggcgaaaaaaaaggcgattttatctgatcaaagtgatgtggt 47294894  T
Q  116 agaaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccct 215  Q
    ||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  |    
T  47294893 agaaacccactggaaaagaaagctcaagtcgccatggcgagccaaacttcgccaggcgaaatgtcactttttcagcatatgtataaaagctcatttctgt 47294794  T
Q  216 catttcaga 224  Q
    |||||||||    
T  47294793 catttcaga 47294785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 38671473 - 38671673
Alignment:
Q  23 agttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttc-gccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaac 121  Q
    |||||||||| |||||||||| || |||||||||||||| | ||| | | ||||||||||| |||| |||||||| | |||   ||||||||||||||||    
T  38671473 agttggaaaatcaggacaagagcatttcgccatggcgag-acaaagtcctgccaggcgaaataaggcggtttcatttgatccttgtgacgtggcagaaac 38671571  T
Q  122 ccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctcatttc 221  Q
    ||||| |||||||||||||||||||| | | |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38671572 ccactggcaaagaaagctcaagtcgccagg-cgagacaaacttcgccaggcgaaatgttactttttcagcatatgtataaaagctcatttccctcatttc 38671670  T
Q  222 aga 224  Q
    |||    
T  38671671 aga 38671673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 39807008 - 39806814
Alignment:
Q  22 gagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttc-gccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaa 120  Q
    |||||||||||||||||||||| || |||||||||| ||| | | ||||| ||||||||||| |||| |||||||| | |||   |||||||||||||||    
T  39807008 gagttggaaaaacaggacaagagcaattcgccatggtgagaa-atatttctgccaggcgaaataaggcggtttcatatgatccttgtgacgtggcagaaa 39806910  T
Q  121 cccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctc 216  Q
    |||||| |||||| ||||||||||||| ||| | || |||| | |||||||||||||  || ||||||||||  ||||||||| ||||||||||||    
T  39806909 cccactggcaaagcaagctcaagtcgccatggcaagacaaaatccgccaggcgaaattatattttttcagcaattgtataaaagctcatttccctc 39806814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 21818396 - 21818246
Alignment:
Q  72 gccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccagg 171  Q
    |||||| | |||||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||  |||| ||| ||||||||| || || |||    
T  21818396 gccaggaggaaaaaggaggtttcatctgatcagagtgacgtggcagaaacccactggcaaagacagctcatttcgccatggcgagccaaattttgctagg 21818297  T
Q  172 cgaaatgttactttttcagcatatgtataaaaactcatttccctcatttcag 223  Q
    ||| | || || |||||||||| ||||||||| |||||||||||||||||||    
T  21818296 cgagaagtcac-ttttcagcatgtgtataaaagctcatttccctcatttcag 21818246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 28412944 - 28413139
Alignment:
Q  22 gagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaac 121  Q
    |||||||||||||||||||||| || |||||||||||||| |  | |  |||| || |||| ||||  ||||||||| |||   ||||||||||||||||    
T  28412944 gagttggaaaaacaggacaagagcaattcgccatggcgagaaatattcccgcctggtgaaataaggcagtttcatctgatcctggtgacgtggcagaaac 28413043  T
Q  122 ccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctca 217  Q
    ||||| |||||||||||||||||||| ||| ||||||| | | ||||| |||||||  || ||| |||||| | |||||||| |||||||| ||||    
T  28413044 ccactagcaaagaaagctcaagtcgccatggcgagccataatccgccaagcgaaattatattttctcagcacaagtataaaagctcatttctctca 28413139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 2824092 - 2824287
Alignment:
Q  22 gagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaac 121  Q
    ||||| |||||||||| |||||||| |||||||||||||| |  | | ||||| || |||| |||| | |||||||| |||   ||||||||||||||||    
T  2824092 gagttagaaaaacagggcaagaacaattcgccatggcgagaaatattctcgcctggtgaaataaggcgatttcatctgatcctggtgacgtggcagaaac 2824191  T
Q  122 ccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctca 217  Q
    ||| | |||||||||||| |  |||| ||| ||||||| | | |||| |||||||   || |||||||||| | || ||||| |||| ||| ||||    
T  2824192 ccattggcaaagaaagctaagttcgccatggcgagccagagtccgcctggcgaaagtatattttttcagcacaagtttaaaagctcacttctctca 2824287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 9316817 - 9316775
Alignment:
Q  107 tgacgtggcagaaacccactcgcaaagaaagctcaagtcgcga 149  Q
    |||||||||||||||||||| | ||||||||||||| ||||||    
T  9316817 tgacgtggcagaaacccactgggaaagaaagctcaactcgcga 9316775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 45619499 - 45619531
Alignment:
Q  107 tgacgtggcagaaacccactcgcaaagaaagct 139  Q
    |||||||||||||||||||| ||||||||||||    
T  45619499 tgacgtggcagaaacccactggcaaagaaagct 45619531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 4507411 - 4507207
Alignment:
Q  21 agagttggaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaag-gaggtttcatcttatcaaagtgacgtggcagaa 119  Q
    ||||||||||||||||||||| |  ||||||| ||   |||||||||||  ||||| ||||||||  | ||||| |||| |||||||||| |||||||||    
T  4507411 agagttggaaaaacaggacaaaagtacttcgctatatagagcagaaattctgccagacgaaaaaaaagcggttttatctcatcaaagtgatgtggcagaa 4507312  T
Q  120 acccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaatgttactttttcagcatatgtataaaaactcatttccctcatt 219  Q
    ||||||| |||| | ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||    
T  4507311 acccactagcaatgtaagctcaagtcgccatggcgagccaaacttcgccaggcgaaatgtcactttttcagcatatgtataaaagctcatttccttcatt 4507212  T
Q  220 tcaga 224  Q
    |||||    
T  4507211 tcaga 4507207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 4591739 - 4591592
Alignment:
Q  28 gaaaaacaggacaagaacacttcgccatggcgagcagaaatttcgccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaacccactc 127  Q
    |||||||||| ||||| || |||||||||||||| |  | | ||||| ||||||| |||| |||||||||| |||   |||||||||||||||||||||     
T  4591739 gaaaaacagggcaagagcaattcgccatggcgagaaatattctcgcctggcgaaataaggcggtttcatctgatctg-gtgacgtggcagaaacccactg 4591641  T
Q  128 gcaaagaaagctcaagtcgcgatgacgagccaaacttcgccaggcgaaa 176  Q
    ||||||||||||||  |||| ||| ||||||| | |||||| |||||||    
T  4591640 gcaaagaaagctcagttcgccatggcgagccagatttcgcctggcgaaa 4591592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 14413 - 14563
Alignment:
Q  72 gccaggcgaaaaaaggaggtttcatcttatcaaagtgacgtggcagaaacccactcgcaaagaaagctcaagtcgcgatgacgagccaaacttcgccagg 171  Q
    |||||| | |||||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||  |||| ||| ||||||||| || || |||    
T  14413 gccaggaggaaaaaggaggtttcatctgatcagagtgacgtggcagaaacccactggcaaagacagctcatttcgccatggcgagccaaattttgctagg 14512  T
Q  172 cgaaatgttactttttcagcatatgtataaaaactcatttccctcatttcag 223  Q
    ||| | || || |||||||||| ||||||||| |||||||||||||||||||    
T  14513 cgagaagtcac-ttttcagcatgtgtataaaagctcatttccctcatttcag 14563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 202984 - 202947
Alignment:
Q  18 cagagagttggaaaaacaggacaagaacacttcgccat 55  Q
    |||||||||||||||||||||||||| |||||||||||    
T  202984 cagagagttggaaaaacaggacaagagcacttcgccat 202947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1487 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 1430 - 1480
Alignment:
Q  107 tgacgtggcagaaacccactcgcaaagaaagctcaagtcgcgatgacgagc 157  Q
    |||||||||||||||||||| | ||||||||||||| |||| ||| |||||    
T  1430 tgacgtggcagaaacccactggtaaagaaagctcaactcgccatggcgagc 1480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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