View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4662_high_3 (Length: 481)
Name: NF4662_high_3
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 50 - 466
Target Start/End: Complemental strand, 52343403 - 52342983
Alignment:
| Q |
50 |
tgagtgagatgtgcttcctgtcatatgactttaaatctttaatggggaatgaattcagttataactattgattttttgttatgactgaggagatggctga |
149 |
Q |
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| T |
52343403 |
tgagtgagatgtgcttcctgtcatatgactttaaatctttaatggggaatgaattcagttataactattgattttttgttatgactgaggagatggctga |
52343304 |
T |
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| Q |
150 |
tggcttcctgacacattcttacaactgaaagctatctagattctagaatatggttaacgcctaaaaatacaggtctagactagtagacttttccattgaa |
249 |
Q |
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| T |
52343303 |
tggcttcctgacacattcttacaactgaaagctatctagattctagaatatggttaacgcctaaaaatacaggtctagactagtagacttttccattgaa |
52343204 |
T |
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| Q |
250 |
gcactaaacaagcaagattatttattagttacactctttacaaaaatgaactgcatattgaagaacacataaatcacaattcctcttccatattacaaat |
349 |
Q |
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| T |
52343203 |
gcactaaacaagcaagattatttattagttacactctttacaaaaatgaactgcatattgaagaacacataaatcacaattcctcttccatattacaaat |
52343104 |
T |
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| Q |
350 |
tacaatccaatgatccttaaacactaat----caattaataaacaaggcaaacaaataatagttattcatatatataaatatgacaaaccccagttgttt |
445 |
Q |
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| T |
52343103 |
tacaatccaatgatccttaaacactaatcaatcaataaataaacaaggcaaacaaataatagttattcatatatataaatatgacaaaccccagttgttt |
52343004 |
T |
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| Q |
446 |
gtaatttcgattcagatgatg |
466 |
Q |
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| T |
52343003 |
gtaatttcgattcagatgatg |
52342983 |
T |
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