View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4662_high_5 (Length: 456)

Name: NF4662_high_5
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4662_high_5
NF4662_high_5
[»] chr8 (4 HSPs)
chr8 (1-438)||(1423947-1424382)
chr8 (173-284)||(10711976-10712088)
chr8 (224-284)||(44420639-44420699)
chr8 (224-273)||(16985659-16985708)
[»] chr3 (5 HSPs)
chr3 (211-284)||(50056893-50056966)
chr3 (196-284)||(28095952-28096039)
chr3 (172-218)||(50057279-50057325)
chr3 (139-218)||(50057409-50057488)
chr3 (237-284)||(50061382-50061429)
[»] chr7 (2 HSPs)
chr7 (175-260)||(39364335-39364420)
chr7 (224-284)||(29443616-29443676)
[»] chr5 (1 HSPs)
chr5 (139-286)||(1678916-1679066)
[»] chr2 (3 HSPs)
chr2 (176-279)||(25476329-25476432)
chr2 (211-284)||(17508848-17508921)
chr2 (224-284)||(38500219-38500282)
[»] chr4 (2 HSPs)
chr4 (224-284)||(11393149-11393209)
chr4 (224-284)||(11402876-11402936)
[»] scaffold0245 (1 HSPs)
scaffold0245 (237-284)||(12452-12499)
[»] scaffold0118 (1 HSPs)
scaffold0118 (225-284)||(18936-18995)
[»] chr1 (1 HSPs)
chr1 (237-284)||(1286185-1286232)


Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 1424382 - 1423947
Alignment:
Q  1 gtggcgtactacggaaagtgcactcggaatgaacagtacttgcgataaacagtttgcatggtgaatagtgttttctaatgaacagggcttttaggatctc 100  Q
    |||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1424382 gtggcgcactatggaaagtgcactcgaaatgaacagtacttgcgataaacagtgtgcatggtgaatagtgttttctaatgaacagggcttttaggatctc 1424283  T
Q  101 aaagagtccgcgatgaaggcaaaaactcacaataaagacgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaagacccccc 200  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||  | || ||||||||||||||||||||||||||||||||| |||    
T  1424282 aaagagtccgcgatgaacgcataaactcacaataaagacgaaaaaagcaaaagtaaccg-aaagactgcaactagggtttatgcggaaacaagacctccc 1424184  T
Q  201 aagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatatatatagggatccagctc 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||    
T  1424183 aagatcgggagctctgatgccacgtgaaaactaaacattatatttcagagacaaaaaatgtacaactactaatgtgtt--tatatatagggatccagctc 1424086  T
Q  301 cccaagaaatattcattttgctactagcagggggaaaatattcatacggagat-aaaaaatagctataatcattttgctactggcaggggagtatgttat 399  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  1424085 tccaagaaatattcattttgctactagcaggggaaaaatattcatacggagataaaaaaatagctataatcattttgctactagcaggggagtatgttat 1423986  T
Q  400 tcttgtcataggattgaactgaaatcggcaaagctttat 438  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1423985 tcttgtcataggattgaactgaaatcggcaaagctttat 1423947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 173 - 284
Target Start/End: Complemental strand, 10712088 - 10711976
Alignment:
Q  173 tagggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaa-aatgcacaactacta 271  Q
    ||||||||||||||||||||||| |||||||||   ||| |||||||||| ||||||||| || ||||||| |||||||||||| |||| | | | ||||    
T  10712088 tagggtttatgcggaaacaagactccccaagattgagagttctgatgccatgtgaaaactgaatattatatgtcagagataaaataatgtatatccacta 10711989  T
Q  272 atgtgtttatata 284  Q
    |||| ||||||||    
T  10711988 atgtatttatata 10711976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 44420699 - 44420639
Alignment:
Q  224 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 284  Q
    ||||||||| || |||||||||||||||||||  ||  ||||| |||||||||||||||||    
T  44420699 gtgaaaactgaatattatatttcagagataaatgatatacaaccactaatgtgtttatata 44420639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 16985659 - 16985708
Alignment:
Q  224 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaat 273  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||||||    
T  16985659 gtgaaaactgaatattatatttcagagataaataatgtacaaccactaat 16985708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 50056966 - 50056893
Alignment:
Q  211 gctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 284  Q
    |||||||| ||| ||||||||| || ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  50056966 gctctgataccatgtgaaaactgaatattatatttcagagataaataatgtacaaccactaatgtgtttatata 50056893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 284
Target Start/End: Original strand, 28095952 - 28096039
Alignment:
Q  196 cccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaa-aatgcacaactactaatgtgtttatata 284  Q
    ||||||||||| |||||||  |||||| |||||||| ||| |||||||||||||||||||| |||  ||||| |||||||||||||||||    
T  28095952 cccccaagatcgggagctc--atgccatgtgaaaacaaaatattatatttcagagataaaataatttacaaccactaatgtgtttatata 28096039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 50057325 - 50057279
Alignment:
Q  172 ctagggtttatgcggaaacaagaccccccaagatcaggagctctgat 218  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  50057325 ctagggtttatgcggaagcaacaccccccaagatcgggagctctgat 50057279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 50057488 - 50057409
Alignment:
Q  139 cgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaagaccccccaagatcaggagctctgat 218  Q
    ||||||||| ||||||||  |||| ||| ||  |||||||||||| |||| |||  |||||||||||| |||||||||||    
T  50057488 cgaaaaaagaaaaagtaaccgcaaagacggcggctagggtttatgtggaagcaacgccccccaagatcgggagctctgat 50057409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 50061429 - 50061382
Alignment:
Q  237 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 284  Q
    ||||||||||||||||||| |||| | ||| |||||||||||||||||    
T  50061429 attatatttcagagataaataatgtagaacgactaatgtgtttatata 50061382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 39364335 - 39364420
Alignment:
Q  175 gggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatg 260  Q
    |||||||||||||| |||| |||| |||||||||||||||||||  || ||||||||| ||  |||||||||| ||||||| ||||    
T  39364335 gggtttatgcggaagcaaggcccctcaagatcaggagctctgatatcatgtgaaaactgaatgttatatttcaaagataaataatg 39364420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 29443616 - 29443676
Alignment:
Q  224 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 284  Q
    ||||||||| || |||||||||||  |||||| |||  ||||| |||||||||||||||||    
T  29443616 gtgaaaactgaatattatatttcactgataaataatatacaaccactaatgtgtttatata 29443676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 286
Target Start/End: Original strand, 1678916 - 1679066
Alignment:
Q  139 cgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacat 238  Q
    ||||||||||||||||||  |||| | | ||  ||| |||||||| |||| |||| ||||| |||||||  ||||  ||||||| ||||||||  |  ||    
T  1678916 cgaaaaaagcaaaagtaaacgcaaaggcggcggctaaggtttatgtggaagcaaggccccctaagatcaaaagcttcgatgccatgtgaaaacatactat 1679015  T
Q  239 tatatttcagagat---aaaaaatgcacaactactaatgtgtttatatata 286  Q
    ||||||||||||||   |||||||| ||||| |||||| ||||||||||||    
T  1679016 tatatttcagagataaaaaaaaatgtacaaccactaatatgtttatatata 1679066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 279
Target Start/End: Original strand, 25476329 - 25476432
Alignment:
Q  176 ggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgt 275  Q
    ||||||||||||| |||| ||||    ||||  |||||||||||||| ||||||||| || ||||||||||| ||||||| |||  ||||| ||||||||    
T  25476329 ggtttatgcggaagcaaggcccctagtgatcgagagctctgatgccatgtgaaaactgaagattatatttcaaagataaataatttacaaccactaatgt 25476428  T
Q  276 gttt 279  Q
    ||||    
T  25476429 gttt 25476432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 17508921 - 17508848
Alignment:
Q  211 gctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 284  Q
    |||||||| ||| ||||||| | || ||||||||||||| ||||| |||| ||||| |||||||||||||||||    
T  17508921 gctctgataccatgtgaaaattgaatattatatttcagaaataaataatgtacaaccactaatgtgtttatata 17508848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 38500282 - 38500219
Alignment:
Q  224 gtgaaaactaaacattatatttcaga---gataaaaaatgcacaactactaatgtgtttatata 284  Q
    ||||||||| || |||||||||||||   |||||| |||| ||||| |||||||||||||||||    
T  38500282 gtgaaaactgaatattatatttcagacgagataaataatgtacaaccactaatgtgtttatata 38500219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 11393209 - 11393149
Alignment:
Q  224 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 284  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||| |||||||||||||    
T  11393209 gtgaaaacttaatattatatttcagagataaataatgtacaaccactgatgtgtttatata 11393149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 11402936 - 11402876
Alignment:
Q  224 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 284  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||| |||||||||||||    
T  11402936 gtgaaaacttaatattatatttcagagataaataatgtacaaccactgatgtgtttatata 11402876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 12452 - 12499
Alignment:
Q  237 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 284  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  12452 attatatttcagagataaataatgtacaaccactaatgtgtttatata 12499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 18995 - 18936
Alignment:
Q  225 tgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 284  Q
    ||||||||||| ||||||||| ||||||||| |||| ||||| | |||||||||||||||    
T  18995 tgaaaactaaatattatattttagagataaataatgtacaaccattaatgtgtttatata 18936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 1286185 - 1286232
Alignment:
Q  237 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 284  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  1286185 attatatttcagagataaataatgtacaaccactaatgtgtttatata 1286232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University