View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4662_low_10 (Length: 370)
Name: NF4662_low_10
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 37558602 - 37558943
Alignment:
| Q |
19 |
agccatgtcaaatttaaggcctgtaaaataatcttactatagcaataataagaacatgtaagttttaaaattggacccaataagaataatgctattgcca |
118 |
Q |
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| T |
37558602 |
agccatgtcaaatttaaggcctgtaaaataatcttactatagcaataataagaacatgtaagttttaaaattggacccgataagaataatgctattgcca |
37558701 |
T |
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| Q |
119 |
ataaccatttgcgaattatcatctcacaaaatcaaaatctcttgtatcagccaacaatagaaaatctgcatacaatctaatgaaaatttaaatcagttgt |
218 |
Q |
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| T |
37558702 |
ataaccatttgcgaattatcatctcacaaaatcaaaatctcttgtatcagccaacaatagaaaatctgcatacaatctactgaaaatttaaatcagttgt |
37558801 |
T |
|
| Q |
219 |
agaaagttctaccagaatatcactcgaccctatgatcatttgtgaacaatgtacagaatctctacatatcaaaagttcaagccttagctccctgctgctg |
318 |
Q |
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| T |
37558802 |
agaaagttctaccagaatatcactcgaccctatgatcatttgtgaacaatgtacagaatctctacatatcaaaagttcaagccttagctccctgctgctg |
37558901 |
T |
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| Q |
319 |
caatcttatcttcactacctgcaaaaaagaactaggcctatg |
360 |
Q |
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| T |
37558902 |
caatcttatcttcactacctgcaaaaaagaaccaggcctatg |
37558943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 21359602 - 21359566
Alignment:
| Q |
310 |
ctgctgctgcaatcttatcttcactacctgcaaaaaa |
346 |
Q |
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| T |
21359602 |
ctgctgctgcaatcttatcttcaccacctgcagaaaa |
21359566 |
T |
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