View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4662_low_11 (Length: 364)
Name: NF4662_low_11
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 16156843 - 16156519
Alignment:
| Q |
18 |
cttttgtggtcaaaataaaaatattaattttatcaataatggacaaaaacctataaagggacttggaccaattttaacgcaatccaactcacttatttgg |
117 |
Q |
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| T |
16156843 |
cttttgtggtcaaaatagaaatattaatttgatcaataatggaaaaaaatctataa-gggacttggaccaa----aatgcaatccaactaacttatttgg |
16156749 |
T |
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| Q |
118 |
actttgcatgtttctgcaagattggcaaggtagcttgttttacaaataatgggattgtttgatcaatttgattaaagaaattcatttaataaataatatt |
217 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |
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| T |
16156748 |
actttgcatgtttctgcaatattagcaaggtagcttgttttacaaataatgggattgtttgatcaatttgattaaataaattcatttaaaagataatatt |
16156649 |
T |
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| Q |
218 |
tcaaatgccagactaaaaatagcgtgttaaccacattaagaggtggaaagtaaaaaattaccgaataatata-ttgccaccaaatataaagtagtgtttg |
316 |
Q |
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||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| |
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| T |
16156648 |
tcaaatgtcagactaaaaatagcgtgttaaacacactaagaggtggaaagtaaaaaattaccgaataatatagttgccacgaaatataaagcagtgtttg |
16156549 |
T |
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| Q |
317 |
ttaacaacatgaaaattgagattgatagtt |
346 |
Q |
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|||||||||||||||| ||||||||||||| |
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| T |
16156548 |
ttaacaacatgaaaatcgagattgatagtt |
16156519 |
T |
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