View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4662_low_13 (Length: 297)
Name: NF4662_low_13
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662_low_13 |
 | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0121 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 28 - 287
Target Start/End: Complemental strand, 41771548 - 41771289
Alignment:
| Q |
28 |
tgttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaactttactgctt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41771548 |
tgttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaactttactgctt |
41771449 |
T |
|
| Q |
128 |
gaagatattggaaacaaaagatgggtgtttatttcagatcaacaaaaggtatttatgattaacttaaacttaatttggagttgtgtttaatttatttctt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41771448 |
gaagatattggaaacaaaagatgggtgtttatttcagatcaacaaaaggtatttatgattaacttaaacttaatttgaagttgtgtttaatttatttctt |
41771349 |
T |
|
| Q |
228 |
tatgattaacttatcttaatttgtttgtatgattcagagattgatgagtgtgtttgatga |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41771348 |
tatgattaacttatcttaatttgtttgtatgattcagggattgatgagtgtgtttgatga |
41771289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 177
Target Start/End: Original strand, 7308466 - 7308609
Alignment:
| Q |
37 |
agatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaactttactgcttgaagatatt |
136 |
Q |
| |
|
|||||||||||||||||| || || || || ||||||||||| |||| ||||| | ||| ||||||||||||| | || |||||||||||||||||| |
|
|
| T |
7308466 |
agatgcaaatgaccaatactttcctttggcttttggagttgtagagacagaaacaacagattcatggaggtggttccttaccttactgcttgaagatatt |
7308565 |
T |
|
| Q |
137 |
gga---aacaaaagatgggtgtttatttcagatcaacaaaaggt |
177 |
Q |
| |
|
||| || | |||||||| |||||||| |||||||||||||| |
|
|
| T |
7308566 |
ggaagtaataggagatgggtatttatttctgatcaacaaaaggt |
7308609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 23505782 - 23505677
Alignment:
| Q |
35 |
agagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaactttactgcttgaagata |
134 |
Q |
| |
|
|||||||||||||||||||| ||||| || || ||||||||||| |||| ||| || | ||| | ||||||||||| | || |||||||||||||||| |
|
|
| T |
23505782 |
agagatgcaaatgaccaatacttccctttggcttttggagttgtagagactgagacaacagatccttggaggtggttccttaccttactgcttgaagata |
23505683 |
T |
|
| Q |
135 |
ttggaa |
140 |
Q |
| |
|
|||||| |
|
|
| T |
23505682 |
ttggaa |
23505677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 1379797 - 1379765
Alignment:
| Q |
146 |
agatgggtgtttatttcagatcaacaaaaggta |
178 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
1379797 |
agatgggtctttatttcagatcaacaaaaggta |
1379765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 28 - 287
Target Start/End: Original strand, 35598634 - 35598892
Alignment:
| Q |
28 |
tgttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaactttactgctt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35598634 |
tgttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaactttactgctt |
35598733 |
T |
|
| Q |
128 |
gaagatattggaaacaaaagatgggtgtttatttcagatcaacaaaaggtatttatgattaacttaaacttaatttggagttgtgtttaatttatttctt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
35598734 |
gaagatattggaaacaaaagatgggtgtttatttcagatcaacaaaaggtatttatgattaactt-aacttaatttgaagttgtgttttatttatttctt |
35598832 |
T |
|
| Q |
228 |
tatgattaacttatcttaatttgtttgtatgattcagagattgatgagtgtgtttgatga |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35598833 |
tatgattaacttatcttaatttgtttgtatgattcagggattgatgagtgtgtttgatga |
35598892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 11318334 - 11318246
Alignment:
| Q |
29 |
gttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaac |
117 |
Q |
| |
|
|||| |||||| ||||||| |||||||| || |||||||||||||| || |||| |||||||||||| ||||||| |||||| |||| |
|
|
| T |
11318334 |
gttgcaagagacccaaatgatcaatattttcctttagcatttggagtggtcgagactgaaaccaaagaatcatggagatggtttctaac |
11318246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 1770751 - 1770791
Alignment:
| Q |
35 |
agagatgcaaatgaccaatatttcccattagcatttggagt |
75 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
1770751 |
agagatgcaaatgatcaatatttttcattagcatttggagt |
1770791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 17323296 - 17323328
Alignment:
| Q |
146 |
agatgggtgtttatttcagatcaacaaaaggta |
178 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
17323296 |
agatgggtctttatttcagatcaacaaaaggta |
17323328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 13650029 - 13649763
Alignment:
| Q |
20 |
ttagatgctgttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaactt |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13650029 |
ttagttgctgttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacttggaggtggtttttaactt |
13649930 |
T |
|
| Q |
120 |
tactgcttgaagatattggaaacaaaagatgggtgtttatttcagatcaacaaaaggtatttatgattaacttaaacttaatttggagttgtgtttaatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
13649929 |
tactgcttgaagatattggaaacaaaagatgggtgtttatttcagatcaacaaaaggtaattatgattaactt-aacttaatttggagctgtgttttatt |
13649831 |
T |
|
| Q |
220 |
tatttctttatgattaacttatcttaatttgtttgtatgattcagagattgatgagtgtgtttgatga |
287 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13649830 |
tatttatttatgattaacttatcttaatttgtttgtatgattcatggattgatgagtgtgtttgatga |
13649763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 18131604 - 18131516
Alignment:
| Q |
29 |
gttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaac |
117 |
Q |
| |
|
|||||||||| ||||||| |||||||| || |||||||||||||| || |||| |||||||||||| ||||||| |||||| |||| |
|
|
| T |
18131604 |
gttggaagaggcccaaatgatcaatattttcctttagcatttggagtggtcgagactgaaaccaaagaatcatggagatggtttctaac |
18131516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 20653593 - 20653645
Alignment:
| Q |
29 |
gttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttga |
81 |
Q |
| |
|
||||| || ||||||||||||||||||| ||| ||||| ||||| |||||||| |
|
|
| T |
20653593 |
gttggtagggatgcaaatgaccaatattaccctttagcttttggggttgttga |
20653645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 28 - 287
Target Start/End: Original strand, 47735173 - 47735431
Alignment:
| Q |
28 |
tgttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaactttactgctt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47735173 |
tgttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaactttactgctt |
47735272 |
T |
|
| Q |
128 |
gaagatattggaaacaaaagatgggtgtttatttcagatcaacaaaaggtatttatgattaacttaaacttaatttggagttgtgtttaatttatttctt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| || ||||||| |||||||| || |
|
|
| T |
47735273 |
gaagatattggaaacaaaagatgggtgtttatttcagatcaacaaaaggtaattatgattaactt-aacttaatttgaagatgtgttttatttatttatt |
47735371 |
T |
|
| Q |
228 |
tatgattaacttatcttaatttgtttgtatgattcagagattgatgagtgtgtttgatga |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47735372 |
tatgattaacttatcttaatttgtttgtatgattcaaggattgatgagtgtgtttgatga |
47735431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 34797534 - 34797383
Alignment:
| Q |
29 |
gttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaactttactgcttg |
128 |
Q |
| |
|
||||| |||||||||||||||||||| || || || || ||||||||||| |||| |||||| | ||| ||||||||||||| | || |||||||||| |
|
|
| T |
34797534 |
gttggtagagatgcaaatgaccaatactttcctttggcttttggagttgtagagactgaaacaacagattcatggaggtggttccttaccttactgcttg |
34797435 |
T |
|
| Q |
129 |
aagatattgga---aacaaaagatgggtgtttatttcagatcaacaaaaggt |
177 |
Q |
| |
|
||||||||||| || | |||||||| |||||||| |||||||||||||| |
|
|
| T |
34797434 |
aagatattggaactaataggagatgggtatttatttctgatcaacaaaaggt |
34797383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 13048192 - 13048081
Alignment:
| Q |
29 |
gttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaactttactgcttg |
128 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| | || ||||||||||| |||| ||| || | | | | ||||||||||| | || |||||||||| |
|
|
| T |
13048192 |
gttggtagagatgcaaatgaccaatacttccctctggcttttggagttgtagagactgagacaacatattcttggaggtggttccttaccttactgcttg |
13048093 |
T |
|
| Q |
129 |
aagatattggaa |
140 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13048092 |
aagatattggaa |
13048081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 22370960 - 22370855
Alignment:
| Q |
35 |
agagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaactttactgcttgaagata |
134 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||| |||| ||| || | ||| | ||||||||||| | || |||||||||||||||| |
|
|
| T |
22370960 |
agagatgcaaatgaccaatatttccctttggcttttggagttgtagagactgagacaacagattcttggaggtggttccttaccttactgcttgaagata |
22370861 |
T |
|
| Q |
135 |
ttggaa |
140 |
Q |
| |
|
|||||| |
|
|
| T |
22370860 |
ttggaa |
22370855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 44478196 - 44478258
Alignment:
| Q |
25 |
tgctgttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatga |
87 |
Q |
| |
|
|||||||||||||||||||||||| || |||| |||||| || |||||||| ||||||||||| |
|
|
| T |
44478196 |
tgctgttggaagagatgcaaatgatcagtattacccattggcttttggagtggttgagaatga |
44478258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 70987 - 70882
Alignment:
| Q |
29 |
gttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaactttactgcttg |
128 |
Q |
| |
|
||||| |||||||||||||||||||| || || || || ||||||||||| |||| |||||| | ||| ||||||||||||| | || |||||||| | |
|
|
| T |
70987 |
gttggtagagatgcaaatgaccaatactttcctttggcttttggagttgtagagactgaaacaacagattcatggaggtggttccttaccttactgctcg |
70888 |
T |
|
| Q |
129 |
aagata |
134 |
Q |
| |
|
|||||| |
|
|
| T |
70887 |
aagata |
70882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 43564 - 43652
Alignment:
| Q |
29 |
gttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatgaaaccaaagagacatggaggtggtttttaac |
117 |
Q |
| |
|
|||||||||| ||||||| |||||||| || |||||||||||||| || |||| |||||||||||| ||||||| |||||| |||| |
|
|
| T |
43564 |
gttggaagaggcccaaatgatcaatattttcctttagcatttggagtggtcgagactgaaaccaaagaatcatggagatggtttctaac |
43652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 21975979 - 21975920
Alignment:
| Q |
28 |
tgttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaatga |
87 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||| || |||||||| ||||||||||| |
|
|
| T |
21975979 |
tgttggaagagatgcaaatgatcagtattacccattggcttttggagtggttgagaatga |
21975920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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