View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4662_low_2 (Length: 518)
Name: NF4662_low_2
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Original strand, 30408944 - 30409443
Alignment:
| Q |
1 |
agatacatggagacttcaaaacttcgaaaatcttgattgattcagtaagtggattcattgattttacaagcttagagatggatcgttaattagttaatca |
100 |
Q |
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| T |
30408944 |
agatacatggagacttcaaaacttcgaaaatcttgattggttcagtaagtggattcattgattttacaagcttagagatggatcgttaattagttaatca |
30409043 |
T |
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| Q |
101 |
agtttgtaaatttgtttatgtgaatgacagaactacaatgcaaaactattctttcttgggtttttaaaagttagatcagatagtaatatgtccgactacg |
200 |
Q |
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| T |
30409044 |
agtttgtaaatttgtttatgtgaatgacagaactacaatgcaaaactattatttcttgggtttttaaaagttagatcagatagtaatatgcccgactacg |
30409143 |
T |
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| Q |
201 |
atgtggtggatatgggccctcaaattaacgcgacacctgagtatatagacacaggtacctaaatcttttttaagtcaatattggcagttgcagttttctt |
300 |
Q |
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| T |
30409144 |
atgtggtggatatgggccctcaaattaacgcgacacctgagtatatagacacaggtacctaaatcttttttaagtcaatattggcagttgcagttttctt |
30409243 |
T |
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| Q |
301 |
tatgagaagttttaatttgatgttaaatataatgtcctctgatatgacccctctgcataatgtgatgtatgtattttgatattcaaataacgcaacactt |
400 |
Q |
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| T |
30409244 |
tatgagaagttttaatttgatgttaaatataatgtcctctgatatgacccctctgcataatgtgatgtatgtattttgatattcaaataacgcaacactt |
30409343 |
T |
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| Q |
401 |
tattgtgtttagagtttagatgttttcttttaactcaaattcaaagggggcttagcttaacgaaaaccatacacttcccattcccaactagtcagtctgt |
500 |
Q |
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| T |
30409344 |
tattgtgtttagagtttagatgttttcttttaactcaaattcaaa--gggcttagcttaacgaaaaccatacacttcccattcccaactagtcagtctgt |
30409441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 30405106 - 30405260
Alignment:
| Q |
2 |
gatacatggagacttcaaaacttcgaaaatcttgattgattcagtaagtggattcattgatttt------acaagcttagagatggatcgttaattagtt |
95 |
Q |
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|||||||||| |||| |||||||| ||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||| ||| ||||| |
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| T |
30405106 |
gatacatggaaacttgaaaacttctaaaatcttgattgattctgtaagttgattagttgattttacactaacaagcttagagatggagagtttgctagtt |
30405205 |
T |
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| Q |
96 |
aatcaa-gtttgtaaatttgtttatgtgaatgacagaactacaatgcaaaactat |
149 |
Q |
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| T |
30405206 |
tcacaaggtttataaattcctttatgtcaatgacagaaccacaatgcaaaactat |
30405260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 30401745 - 30401818
Alignment:
| Q |
2 |
gatacatggagacttcaaaacttcgaaaatcttgattgattcagtaagtggattc--attgattttacaagctt |
73 |
Q |
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| T |
30401745 |
gatacatggagatttcaatacttctaatatcctgattgattctgtaagtggattcatattgatcttacaagctt |
30401818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 30422156 - 30422201
Alignment:
| Q |
10 |
gagacttcaaaacttcgaaaatcttgattgattcagtaagtggatt |
55 |
Q |
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| T |
30422156 |
gagacttcaaaacttctaacatcttgattgattctgtaagtggatt |
30422201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 445
Target Start/End: Original strand, 30411848 - 30411898
Alignment:
| Q |
399 |
tttattgtgtttagagtttagatgttttc----ttttaactcaaattcaaa |
445 |
Q |
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| T |
30411848 |
tttattgtatttagagtttagatgttttctatattttaactcaaattcaaa |
30411898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 31445835 - 31445909
Alignment:
| Q |
2 |
gatacatggagacttcaaaacttcgaaaatcttgattgattcagtaagtggattcattgattttacaagcttaga |
76 |
Q |
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| T |
31445835 |
gatacacggagaatttaaaacatctaagatcttgattgattcagtaagtgaatttattgattttacaagcttaga |
31445909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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